Non-Coding RNA Search

Ss1.1-Pig3-SRG8004D12.3

Sequence:


               
               TAAGAGAAGCCATTGTTCATATTTAAACAAATAGCCTTCCGACTTTTGTCGTGTTTAGAT
TGAATATTTTTAAGCTTTTATTTTCACGCCATAAATCCTAATCTAAGTGTCATTTCTCCA
TATATCCAGAACAGGTATGTTTACATTTTCCATCAGTTATTGCAGAAGATGATGCAGAGC
CCGAGGACAAAGGGTCATTGCCACAGCCGCCCATTACTGAGGTGGAAACACAGGTGCTCA
GGGAAAAACTCACCTCCAGCACCTCTACGTTTGAAGCTGCCTCGGAAGCTGAGGCCCCTT
TCGAGGAGCAGCAGAGAAATCTCAGAGGGGAGAGACCACGGCAGCCCCACGCCCGGGGGA
AGAGCTTCGGGCAGATGGTCGTCACCCATAAGACACCTCCCCCAGGGAAGAAAGATCACG
AATGCCTTGAATGTGGTAAAGCCTTCATTTACAACTCACACCTTATAATCCACCAGAGAA
TTCATTCCGGAGAGAAACCCTATAAATGCAGTGACTGTGGGAAAACTTTCAACCAGAGCT
CAAACTTCATTCAGCATCAGAGAATTCACACAGGAGAGAAGCCCTACGAATGTCGTGAAT
GTGGGAAGGCCTTCAGGTGGAGCGCTCACCTCGTTCAGCATCAGAGGATTCATTCGGGGG
AGAAGCCCTTCGAGTGTAATGAGTGTGGGAAGGCCTTCAGTCAGAGCTCCTATATAAGTC
AGCACCTGCGAATCCACAGCGGAGAGAAGCCTTTCCTATGCAGAGAATGTGGGAAGGCCT
ACAGGTGGAGTTCAGAGCTTGTGAGGCATCAGAGTTCATGCTGGGAAAGAGCCCTTCCCA
GGGACCCGGGGGAGAAAGCCTCCAGACAGAACTGGGCTTTTGTCTAATCAGTTTTAGGAC
TAGAGTCCATAAACGTTAGGCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGAGAAGCCATTGTTCATATTTAAACAAATAGCCTTCCGACTTTTGTCGTGTTTAGAT
TGAATATTTTTAAGCTTTTATTTTCACGCCATAAATCCTAATCTAAGTGTCATTTCTCCA
TATATCCAGAACAGGTATGTTTACATTTTCCATCAGTTATTGCAGAAGATGATGCAGAGC
CCGAGGACAAAGGGTCATTGCCACAGCCGCCCATTACTGAGGTGGAAACACAGGTGCTCA
GGGAAAAACTCACCTCCAGCACCTCTACGTTTGAAGCTGCCTCGGAAGCTGAGGCCCCTT
TCGAGGAGCAGCAGAGAAATCTCAGAGGGGAGAGACCACGGCAGCCCCACGCCCGGGGGA
AGAGCTTCGGGCAGATGGTCGTCACCCATAAGACACCTCCCCCAGGGAAGAAAGATCACG
AATGCCTTGAATGTGGTAAAGCCTTCATTTACAACTCACACCTTATAATCCACCAGAGAA
TTCATTCCGGAGAGAAACCCTATAAATGCAGTGACTGTGGGAAAACTTTCAACCAGAGCT
CAAACTTCATTCAGCATCAGAGAATTCACACAGGAGAGAAGCCCTACGAATGTCGTGAAT
GTGGGAAGGCCTTCAGGTGGAGCGCTCACCTCGTTCAGCATCAGAGGATTCATTCGGGGG
AGAAGCCCTTCGAGTGTAATGAGTGTGGGAAGGCCTTCAGTCAGAGCTCCTATATAAGTC
AGCACCTGCGAATCCACAGCGGAGAGAAGCCTTTCCTATGCAGAGAATGTGGGAAGGCCT
ACAGGTGGAGTTCAGAGCTTGTGAGGCATCAGAGTTCATGCTGGGAAAGAGCCCTTCCCA
GGGACCCGGGGGAGAAAGCCTCCAGACAGAACTGGGCTTTTGTCTAATCAGTTTTAGGAC
TAGAGTCCATAAACGTTAGGCACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|8894655|emb|CAB95963.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|8894655|emb|CAB95963.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               96-415, - strand, RNAz p=0.98159
               

               
               696-813, + strand, RNAz p=0.564813

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               96-415, - strand, RNAz p=0.98159
               

               
               696-813, + strand, RNAz p=0.564813

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               17-918, gnl|bosTau2|chr19 (14948855-14947951)
               


               
               286-869, gnl|bosTau2|chr14 (3127981-3127388)
               

               
               286-869, gnl|Hg17|chr8 (145970189-145969596)
               

               
               286-869, gnl|Mm7|chr11 (70853310-70853903)
               


               
               387-836, gnl|bosTau2|chr10 (8996783-8996333)
               

               
               387-836, gnl|Hg17|chr19 (42818588-42818054)
               

               
               387-836, gnl|Mm7|chr2 (127310214-127309764)
               


               
               398-780, gnl|bosTau2|chr10 (8996688-8996306)
               

               
               398-780, gnl|Hg17|chr19 (42818493-42818027)
               

               
               398-780, gnl|Mm7|chr2 (127310119-127309737)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-918, gnl|bosTau2|chr19 (14948855-14947951)
               


               
               286-869, gnl|bosTau2|chr14 (3127981-3127388)
               

               
               286-869, gnl|Hg17|chr8 (145970189-145969596)
               

               
               286-869, gnl|Mm7|chr11 (70853310-70853903)
               


               
               387-836, gnl|bosTau2|chr10 (8996783-8996333)
               

               
               387-836, gnl|Hg17|chr19 (42818588-42818054)
               

               
               387-836, gnl|Mm7|chr2 (127310214-127309764)
               


               
               398-780, gnl|bosTau2|chr10 (8996688-8996306)
               

               
               398-780, gnl|Hg17|chr19 (42818493-42818027)
               

               
               398-780, gnl|Mm7|chr2 (127310119-127309737)

	96-415, - strand, RNAz p=0.98159
	696-813, + strand, RNAz p=0.564813

	17-918, gnl\|bosTau2\|chr19 (14948855-14947951)

	286-869, gnl\|bosTau2\|chr14 (3127981-3127388)
	286-869, gnl\|Hg17\|chr8 (145970189-145969596)
	286-869, gnl\|Mm7\|chr11 (70853310-70853903)

	387-836, gnl\|bosTau2\|chr10 (8996783-8996333)
	387-836, gnl\|Hg17\|chr19 (42818588-42818054)
	387-836, gnl\|Mm7\|chr2 (127310214-127309764)

	398-780, gnl\|bosTau2\|chr10 (8996688-8996306)
	398-780, gnl\|Hg17\|chr19 (42818493-42818027)
	398-780, gnl\|Mm7\|chr2 (127310119-127309737)