Non-Coding RNA Search

Ss1.1-Pig3-SRG8004D22.5

Sequence:


               
               AAAAAAAATTAAAAAAACCAAAAACCTAACTAAACCAAAGGGAAGGGTATGCAATCAACT
GGGATATATCTGCTGGGGTCTCCAGGAGCTGGGCAAATTCTTTCCACAATTTAAGCAGGA
GGACTTTTCTTTTCCTCGTGGGGATGGGGTGAGCCCAAGATGGATTGCAGAGGAGGTGGC
AGCATCAGAACTTGTATTTCCTGGATGGCTCCAGTCTTCCAAACCGCTGTTGACAGAGTC
TTAATTCTGTGTTTGCTTCCTTATTGCCGAGGACTCGGTTACACCAGGCTTTATCCTGTA
CAATCACAACTACATGGGAAAACACCTCACCCACCATGCCCAGTGCCAGGAGCAGAGTCA
TCACGTCCTGACGGACTTGGGGGTGCCCACGGCGAGCACACCGGCCCACGGGCTCAGCTT
CTACCCGGCCCTGCAAGTGGCCGCTTGCCCAGGGTGGGTGGTGTATGTGGACAGCTGGCA
GAAAAGAATGTGCTCAGTTTCATTTGCCCCAGACTTCTCTTCCTGCCAAGGCTGGAGGCG
ACTTGTGGTGGAAAGTGTTTGCTGAGCCTTGGAAGAGGCTGGGGGTGCGGGGGATAGAGG
CGGAGATGCAAGGTATTATTATTGCTGCCCTGGGAGTAAAATGAATAATAAATAGATAAA
TGATAATCAATAATAAAACTGGGACTATTGCACCCTGACTAGTCAGAAAAGTCGGGTCAA
CCTGCTGATATTTTGAGGTTCGCATAGGAGACTCCGCTTATATGTTGGGAAACAAATTCT
ATTATTAAAAACAGGAACTCCTATAGTTTTTTGTTCGTTTGTTTGTTTTTGGCTAGCAGC
TTGTTGTGGGACTGATCTTAGTTCCCAGACCAAGGACTGAACCTGGGCCTCAGCAGGGAA
AAGCGCCAAATCCTCACAACTAGACCACCAGGGAACTCCCAAGAGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAATTAAAAAAACCAAAAACCTAACTAAACCAAAGGGAAGGGTATGCAATCAACT
GGGATATATCTGCTGGGGTCTCCAGGAGCTGGGCAAATTCTTTCCACAATTTAAGCAGGA
GGACTTTTCTTTTCCTCGTGGGGATGGGGTGAGCCCAAGATGGATTGCAGAGGAGGTGGC
AGCATCAGAACTTGTATTTCCTGGATGGCTCCAGTCTTCCAAACCGCTGTTGACAGAGTC
TTAATTCTGTGTTTGCTTCCTTATTGCCGAGGACTCGGTTACACCAGGCTTTATCCTGTA
CAATCACAACTACATGGGAAAACACCTCACCCACCATGCCCAGTGCCAGGAGCAGAGTCA
TCACGTCCTGACGGACTTGGGGGTGCCCACGGCGAGCACACCGGCCCACGGGCTCAGCTT
CTACCCGGCCCTGCAAGTGGCCGCTTGCCCAGGGTGGGTGGTGTATGTGGACAGCTGGCA
GAAAAGAATGTGCTCAGTTTCATTTGCCCCAGACTTCTCTTCCTGCCAAGGCTGGAGGCG
ACTTGTGGTGGAAAGTGTTTGCTGAGCCTTGGAAGAGGCTGGGGGTGCGGGGGATAGAGG
CGGAGATGCAAGGTATTATTATTGCTGCCCTGGGAGTAAAATGAATAATAAATAGATAAA
TGATAATCAATAATAAAACTGGGACTATTGCACCCTGACTAGTCAGAAAAGTCGGGTCAA
CCTGCTGATATTTTGAGGTTCGCATAGGAGACTCCGCTTATATGTTGGGAAACAAATTCT
ATTATTAAAAACAGGAACTCCTATAGTTTTTTGTTCGTTTGTTTGTTTTTGGCTAGCAGC
TTGTTGTGGGACTGATCTTAGTTCCCAGACCAAGGACTGAACCTGGGCCTCAGCAGGGAA
AAGCGCCAAATCCTCACAACTAGACCACCAGGGAACTCCCAAGAGTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               416-573, + strand, RNAz p=0.895959

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               416-573, + strand, RNAz p=0.895959

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-615, gnl|bosTau2|chr25 (19511597-19510968)
               

               
               3-615, gnl|Hg17|chr16 (23244105-23243485)
               


               
               806-945, gnl|bosTau2|chr7 (12316274-12316405)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-615, gnl|bosTau2|chr25 (19511597-19510968)
               

               
               3-615, gnl|Hg17|chr16 (23244105-23243485)
               


               
               806-945, gnl|bosTau2|chr7 (12316274-12316405)

	3-615, gnl\|bosTau2\|chr25 (19511597-19510968)
	3-615, gnl\|Hg17\|chr16 (23244105-23243485)

	806-945, gnl\|bosTau2\|chr7 (12316274-12316405)