Ss1.1-Pig3-SRG8004I03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGAGACCCTGCACCTCCGGCTAAACCCTGAGCCCACGCTGCCCACCATGGATGGCGTGG CTGAGTTCTCCGAGTATGTCTCTGAGACTGTGGACGTGCCATCCCCCTTTGACCTGCTTG AGCCCCCCACCTCAGGGGGCTTCCTCAAGCTCTCCAAGCCTTGCTGCTACATCTTCCCCG GCGGCCGAGGGGACTCTGCCCTCTTTGCTGTTAATGGTTTCAACATCCTGGTGGATGGTG GCTCTGATCGCAAGTCCTGCTTCTGGAAGCTGGTGCGGCACCTAGATCGCATTGACTCGG TTTTACTCACCCACATCGGGGCAGACAACCTGCCAGGCATCAACGGACTCCTACAGCGCA AAGTGGCAGAACTGGAGGAGGAGCAGTCCCAGGGCTCCAGCAGCTACAGCGACTGGGTGA AGAACCTCATCTCCCCTGAGCTTGGAGTTGTCTTCTTTAACGTGCCCGATAAGCTGCGGC TGCCTGATGCCTCCCGGAAGGCCAAGCGCAGCATTGAGGAGGCCTGCCTCACTCTGCAGC ACCTGAACCGTCTGGGCATCCAGGCCGAGCCACTGTACCGTGTGGTCAGCAACACCATTG AGCCACTGACCCTCTTCCACAAAATGGGTGTGGGCCGGCTGGACATGTATGTCCTCAACC CGGTCAAAGACAGCAAGGAGATGCAGTTCCTCATGCAAAAGTGGGCAGGCAACAGTAAAG CTAAGACAGGCATCGTGCTGGCTAATGGGAAGGAGGCTGAGATCTCCGTGCCTTACCTGA CCTCAATCACTGCTCTGGTGGTCTGGCTACCAGCCAACCCCACCGAGAAGATTGTGCGTG TGCTTTTTCCAGGGAATGCTCCCCAGAACAAGATCTTGGAGGGCCTGGAAAAGCTTCGGC ATCTGGACTTCCTGCGCTACCCCGTGGCCACGCAGAAGGACCTGGCCACTGGGGCTGTGC CTGCCAACCTCAAACCCAGCAAAATCAAACAGCGGGCTGATAGCAAGGAAAGCCTCAAGG CCACAACCAAGACAGCTGTGAGCAAGCTGGCCAAACGGGAGGAGGTGGCCGAAGAGGGAG CCAAGGAGGCCCGCTCAGAACTAGCCAAGGAATTAGCCAAGACAGAGAAGAAGGCAAAAG AGTCATCTGAGAAGCCCCCAGAGAAGCCTGCCAAGCCTGAGAGGGTGAAGACAGAGTCGA GTGAGGCACTGAAGGCAGAGAAGCGAAAGCTGATCAAAGACAAGGTGGGGAAGAAGCACC TGAAAGAAAAGATTTCAAAGCTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGAGACCCTGCACCTCCGGCTAAACCCTGAGCCCACGCTGCCCACCATGGATGGCGTGG CTGAGTTCTCCGAGTATGTCTCTGAGACTGTGGACGTGCCATCCCCCTTTGACCTGCTTG AGCCCCCCACCTCAGGGGGCTTCCTCAAGCTCTCCAAGCCTTGCTGCTACATCTTCCCCG GCGGCCGAGGGGACTCTGCCCTCTTTGCTGTTAATGGTTTCAACATCCTGGTGGATGGTG GCTCTGATCGCAAGTCCTGCTTCTGGAAGCTGGTGCGGCACCTAGATCGCATTGACTCGG TTTTACTCACCCACATCGGGGCAGACAACCTGCCAGGCATCAACGGACTCCTACAGCGCA AAGTGGCAGAACTGGAGGAGGAGCAGTCCCAGGGCTCCAGCAGCTACAGCGACTGGGTGA AGAACCTCATCTCCCCTGAGCTTGGAGTTGTCTTCTTTAACGTGCCCGATAAGCTGCGGC TGCCTGATGCCTCCCGGAAGGCCAAGCGCAGCATTGAGGAGGCCTGCCTCACTCTGCAGC ACCTGAACCGTCTGGGCATCCAGGCCGAGCCACTGTACCGTGTGGTCAGCAACACCATTG AGCCACTGACCCTCTTCCACAAAATGGGTGTGGGCCGGCTGGACATGTATGTCCTCAACC CGGTCAAAGACAGCAAGGAGATGCAGTTCCTCATGCAAAAGTGGGCAGGCAACAGTAAAG CTAAGACAGGCATCGTGCTGGCTAATGGGAAGGAGGCTGAGATCTCCGTGCCTTACCTGA CCTCAATCACTGCTCTGGTGGTCTGGCTACCAGCCAACCCCACCGAGAAGATTGTGCGTG TGCTTTTTCCAGGGAATGCTCCCCAGAACAAGATCTTGGAGGGCCTGGAAAAGCTTCGGC ATCTGGACTTCCTGCGCTACCCCGTGGCCACGCAGAAGGACCTGGCCACTGGGGCTGTGC CTGCCAACCTCAAACCCAGCAAAATCAAACAGCGGGCTGATAGCAAGGAAAGCCTCAAGG CCACAACCAAGACAGCTGTGAGCAAGCTGGCCAAACGGGAGGAGGTGGCCGAAGAGGGAG CCAAGGAGGCCCGCTCAGAACTAGCCAAGGAATTAGCCAAGACAGAGAAGAAGGCAAAAG AGTCATCTGAGAAGCCCCCAGAGAAGCCTGCCAAGCCTGAGAGGGTGAAGACAGAGTCGA GTGAGGCACTGAAGGCAGAGAAGCGAAAGCTGATCAAAGACAAGGTGGGGAAGAAGCACC TGAAAGAAAAGATTTCAAAGCTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 40-159, - strand, RNAz p=0.512499 | |
| 48-143, - strand, RNAz p=0.736607 | |
| 480-719, - strand, RNAz p=0.943088 | |
| 840-959, - strand, RNAz p=0.525626 | |
| 902-1004, - strand, RNAz p=0.99494 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-159, - strand, RNAz p=0.512499 | |
| 48-143, - strand, RNAz p=0.736607 | |
| 480-719, - strand, RNAz p=0.943088 | |
| 840-959, - strand, RNAz p=0.525626 | |
| 902-1004, - strand, RNAz p=0.99494 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-1284, gnl|bosTau2|chr21 (34373589-34374872) | |
| 1-1284, gnl|Hg17|chr15 (41600917-41602200) | |
| 1-1284, gnl|Mm7|chr2 (121040221-121041504) | |
| 48-1004, gnl|bosTau2|chr20 (6403583-6404539) | |
| 48-1004, gnl|canFam2|chr2 (58115274-58116464) | |
| 48-1004, gnl|danRer3|chr5 (33732585-33733762) | |
| 48-1004, gnl|dasNov1|scaffold_9897 (67085-65893) | |
| 48-1004, gnl|echTel1|scaffold_317033 (8485-9678) | |
| 48-1004, gnl|fr1|chrUn (120237865-120239048) | |
| 48-1004, gnl|galGal2|chrZ (10978277-10979456) | |
| 48-1004, gnl|hg17|chr5 (71525431-71526621) | |
| 48-1004, gnl|Hg17|chr5 (71525605-71526561) | |
| 48-1004, gnl|loxAfr1|scaffold_7027 (30743-29553) | |
| 48-1004, gnl|mm7|chr13 (96505516-96504328) | |
| 48-1004, gnl|Mm7|chr13 (96505342-96504386) | |
| 48-1004, gnl|monDom2|scaffold_60 (5114665-5115855) | |
| 48-1004, gnl|oryCun1|scaffold_212205 (171976-173167) | |
| 48-1004, gnl|panTro1|chr4 (43936864-43935674) | |
| 48-1004, gnl|rheMac2|chr6 (68343941-68345132) | |
| 48-1004, gnl|rn3|chr2 (30349840-30348651) | |
| 48-1004, gnl|tetNig1|chr4 (2967502-2968668) | |
| 48-1004, gnl|xenTro1|scaffold_120 (648789-649962) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-1284, gnl|bosTau2|chr21 (34373589-34374872) | |
| 1-1284, gnl|Hg17|chr15 (41600917-41602200) | |
| 1-1284, gnl|Mm7|chr2 (121040221-121041504) | |
| 48-1004, gnl|bosTau2|chr20 (6403583-6404539) | |
| 48-1004, gnl|canFam2|chr2 (58115274-58116464) | |
| 48-1004, gnl|danRer3|chr5 (33732585-33733762) | |
| 48-1004, gnl|dasNov1|scaffold_9897 (67085-65893) | |
| 48-1004, gnl|echTel1|scaffold_317033 (8485-9678) | |
| 48-1004, gnl|fr1|chrUn (120237865-120239048) | |
| 48-1004, gnl|galGal2|chrZ (10978277-10979456) | |
| 48-1004, gnl|hg17|chr5 (71525431-71526621) | |
| 48-1004, gnl|Hg17|chr5 (71525605-71526561) | |
| 48-1004, gnl|loxAfr1|scaffold_7027 (30743-29553) | |
| 48-1004, gnl|mm7|chr13 (96505516-96504328) | |
| 48-1004, gnl|Mm7|chr13 (96505342-96504386) | |
| 48-1004, gnl|monDom2|scaffold_60 (5114665-5115855) | |
| 48-1004, gnl|oryCun1|scaffold_212205 (171976-173167) | |
| 48-1004, gnl|panTro1|chr4 (43936864-43935674) | |
| 48-1004, gnl|rheMac2|chr6 (68343941-68345132) | |
| 48-1004, gnl|rn3|chr2 (30349840-30348651) | |
| 48-1004, gnl|tetNig1|chr4 (2967502-2968668) | |
| 48-1004, gnl|xenTro1|scaffold_120 (648789-649962) |