Non-Coding RNA Search

Ss1.1-Pig3-SRG8004L11.3

Sequence:


               
               CTCGGGGGAGGCAGAGGTGCAACTTTCTTCGGTCGTCCCGAATCCGGGTTCATCCGACAC
CAGCCGCCTCCACCATGCCGCATAAGTTCGACCCCAACGAGATAAAAGTCGTGTACATGA
GGTGCACCGGTGGGGAAGTCGGTGCCACGTCTGCCCTGGCCCCCAAGATCGGCCCTCTGG
GTCTGTCTCCAAAAAAGGTCGGTGATGACATCGCCAAGGCAACTGGTGATTGGAAGGGTC
TGAGGATTACAGTGAAACTGACCATTCAGAACAGACAAGCCCAGATTGAGGTGGTACCTT
CTGCTTCTGCCCTGATCATCAAAGCCCTCAAAGAACCACCAAGGGACAGAAAGAAGCAGA
AAAACATTAAGCACAGTGGAAACATTACTTTTGATGAGATCGTCAACATTGCCCGGCAGA
TGCGGCATCGGTCTCTAGCTAGAGAACTTTCTGGAACCATTAAAGAGATCCTGGGGACCG
CCCAGTCTGTGGGCTGCAATGTTGATGGCCGCCACCCTCATGACATCATTGATGATATCA
ACAGTGGCGCAGTGGAGTGCCCCGCTAGTTAAGAACTGCAAAGGAAAAAGGAAAATAAAG
GACCATTTGACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGGGGGAGGCAGAGGTGCAACTTTCTTCGGTCGTCCCGAATCCGGGTTCATCCGACAC
CAGCCGCCTCCACCATGCCGCATAAGTTCGACCCCAACGAGATAAAAGTCGTGTACATGA
GGTGCACCGGTGGGGAAGTCGGTGCCACGTCTGCCCTGGCCCCCAAGATCGGCCCTCTGG
GTCTGTCTCCAAAAAAGGTCGGTGATGACATCGCCAAGGCAACTGGTGATTGGAAGGGTC
TGAGGATTACAGTGAAACTGACCATTCAGAACAGACAAGCCCAGATTGAGGTGGTACCTT
CTGCTTCTGCCCTGATCATCAAAGCCCTCAAAGAACCACCAAGGGACAGAAAGAAGCAGA
AAAACATTAAGCACAGTGGAAACATTACTTTTGATGAGATCGTCAACATTGCCCGGCAGA
TGCGGCATCGGTCTCTAGCTAGAGAACTTTCTGGAACCATTAAAGAGATCCTGGGGACCG
CCCAGTCTGTGGGCTGCAATGTTGATGGCCGCCACCCTCATGACATCATTGATGATATCA
ACAGTGGCGCAGTGGAGTGCCCCGCTAGTTAAGAACTGCAAAGGAAAAAGGAAAATAAAG
GACCATTTGACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55665101|emb|CAH72929.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55665101|emb|CAH72929.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-239, - strand, RNAz p=0.783773
               

               
               400-518, + strand, RNAz p=0.969471

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.783773
               

               
               400-518, + strand, RNAz p=0.969471

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-612, gnl|bosTau2|chr10 (58436732-58436120)
               

               
               1-612, gnl|Hg17|chr2 (203880935-203881544)
               

               
               1-612, gnl|Mm7|chr10 (29480042-29479431)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-612, gnl|bosTau2|chr10 (58436732-58436120)
               

               
               1-612, gnl|Hg17|chr2 (203880935-203881544)
               

               
               1-612, gnl|Mm7|chr10 (29480042-29479431)

	120-239, - strand, RNAz p=0.783773
	400-518, + strand, RNAz p=0.969471

	1-612, gnl\|bosTau2\|chr10 (58436732-58436120)
	1-612, gnl\|Hg17\|chr2 (203880935-203881544)
	1-612, gnl\|Mm7\|chr10 (29480042-29479431)