Non-Coding RNA Search

Ss1.1-Pig3-SRG8005M11.5

Sequence:


               
               CTTCACGGGCACCGTCCACCGCCTCGACAACACCACGGTGATCTACAATTCCAACATCTT
CACGGACCCCTTCTTCATCGTGGAAACCCTGTGCATCATCTGGTTCTCCTTCGAGCTTGT
GGTGCGCTTCTTCGCCTGCCCCAGCAAGACGGACTTCTTCAAAAACATCATGAACTTCAT
CGACATTGTGGCCATCATCCCCTATTTCATCACCCTAGGCACTGAGATAGCGGAGCAGGA
GGGGAACCAGAAGGGCGAGCAGGCCACCTCGCTGGCCATCCTCAGGGTCATTCGGTTGGT
CAGGGTTTTTAGAATCTTCAAACTCTCCCGCCACTCTAAGGGCCTCCAGATCCTGGGCCA
GACCCTCAAAGCTAGTATGAGAGAGTTAGGGCTGCTCATCTTTTTCCTCTTCATCGGGGT
CATACTGTTTTCTAGTGCAGTGTACTTTGCCGAGGCGGAAGAAGCTGAGTCGCACTTTTC
CAGTATCCCCGATGCTTTCTGGTGGGCGGTGGTGTCCATGACCACTGTAGGATACGGTGA
CATGTACCCTGTGACAATTGGAGGCAAGATCGTGGGCTCCTTGTGTGCCATCGCTGGTGT
GCTGACAATTGCCCTGCCCGTACCTGTCATTGTGTCCAATTTCAACTATTTCTACCACCG
AGAAACTGAGGGGGAAGAGCAGGCTCAGTTGCTCCACGTTAGTGCTCCTAATTTAGCCTC
TGACAGTGACCTCAGCCGGCGCAGTTCCTCCACTATCAGCAAATCTGAGTACATGGAGAT
CGAAGAGGATATGAATAATAGCATAGCCCACTTTAGACAGGCCAATATCAGAACTGGCAA
TTGCACCACAGCTAACCAAAACTGTGTTAATAAGAGCAAGCTACTGACTGATGTTTAAAA
AAAAACCAAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCACGGGCACCGTCCACCGCCTCGACAACACCACGGTGATCTACAATTCCAACATCTT
CACGGACCCCTTCTTCATCGTGGAAACCCTGTGCATCATCTGGTTCTCCTTCGAGCTTGT
GGTGCGCTTCTTCGCCTGCCCCAGCAAGACGGACTTCTTCAAAAACATCATGAACTTCAT
CGACATTGTGGCCATCATCCCCTATTTCATCACCCTAGGCACTGAGATAGCGGAGCAGGA
GGGGAACCAGAAGGGCGAGCAGGCCACCTCGCTGGCCATCCTCAGGGTCATTCGGTTGGT
CAGGGTTTTTAGAATCTTCAAACTCTCCCGCCACTCTAAGGGCCTCCAGATCCTGGGCCA
GACCCTCAAAGCTAGTATGAGAGAGTTAGGGCTGCTCATCTTTTTCCTCTTCATCGGGGT
CATACTGTTTTCTAGTGCAGTGTACTTTGCCGAGGCGGAAGAAGCTGAGTCGCACTTTTC
CAGTATCCCCGATGCTTTCTGGTGGGCGGTGGTGTCCATGACCACTGTAGGATACGGTGA
CATGTACCCTGTGACAATTGGAGGCAAGATCGTGGGCTCCTTGTGTGCCATCGCTGGTGT
GCTGACAATTGCCCTGCCCGTACCTGTCATTGTGTCCAATTTCAACTATTTCTACCACCG
AGAAACTGAGGGGGAAGAGCAGGCTCAGTTGCTCCACGTTAGTGCTCCTAATTTAGCCTC
TGACAGTGACCTCAGCCGGCGCAGTTCCTCCACTATCAGCAAATCTGAGTACATGGAGAT
CGAAGAGGATATGAATAATAGCATAGCCCACTTTAGACAGGCCAATATCAGAACTGGCAA
TTGCACCACAGCTAACCAAAACTGTGTTAATAAGAGCAAGCTACTGACTGATGTTTAAAA
AAAAACCAAGCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57107083|ref|XP_543859.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57107083|ref|XP_543859.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               255-820, - strand, RNAz p=0.70358
               

               
               360-479, - strand, RNAz p=0.979547
               

               
               467-639, - strand, RNAz p=0.586688

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               255-820, - strand, RNAz p=0.70358
               

               
               360-479, - strand, RNAz p=0.979547
               

               
               467-639, - strand, RNAz p=0.586688

ncRNA annotation: 1 entry(ies)

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ncRNA annotation: 1 entry(ies)

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               530-640, RF00485;K_chan_RES; (Y00305.1/2573-2686), blast E-value=0

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               530-640, RF00485;K_chan_RES; (Y00305.1/2573-2686), blast E-value=0

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-901, gnl|bosTau2|chr5 (64031790-64032690)
               

               
               1-901, gnl|Hg17|chr12 (4891396-4892296)
               

               
               1-901, gnl|Mm7|chr6 (126665563-126664663)
               


               
               31-894, gnl|bosTau2|chr3 (29975918-29975046)
               

               
               31-894, gnl|Hg17|chr1 (110858823-110857951)
               

               
               31-894, gnl|Mm7|chr3 (106923016-106923888)
               


               
               56-688, gnl|bosTau2|chr15 (37813621-37812983)
               

               
               56-688, gnl|Hg17|chr11 (29989706-29989068)
               

               
               56-688, gnl|Mm7|chr2 (107146808-107147446)
               


               
               79-630, gnl|bosTau2|chr11 (64770346-64770888)
               

               
               79-630, gnl|Hg17|chr2 (11003822-11004364)
               

               
               79-630, gnl|Mm7|chr12 (17229851-17229309)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-901, gnl|bosTau2|chr5 (64031790-64032690)
               

               
               1-901, gnl|Hg17|chr12 (4891396-4892296)
               

               
               1-901, gnl|Mm7|chr6 (126665563-126664663)
               


               
               31-894, gnl|bosTau2|chr3 (29975918-29975046)
               

               
               31-894, gnl|Hg17|chr1 (110858823-110857951)
               

               
               31-894, gnl|Mm7|chr3 (106923016-106923888)
               


               
               56-688, gnl|bosTau2|chr15 (37813621-37812983)
               

               
               56-688, gnl|Hg17|chr11 (29989706-29989068)
               

               
               56-688, gnl|Mm7|chr2 (107146808-107147446)
               


               
               79-630, gnl|bosTau2|chr11 (64770346-64770888)
               

               
               79-630, gnl|Hg17|chr2 (11003822-11004364)
               

               
               79-630, gnl|Mm7|chr12 (17229851-17229309)

	255-820, - strand, RNAz p=0.70358
	360-479, - strand, RNAz p=0.979547
	467-639, - strand, RNAz p=0.586688

	1-901, gnl\|bosTau2\|chr5 (64031790-64032690)
	1-901, gnl\|Hg17\|chr12 (4891396-4892296)
	1-901, gnl\|Mm7\|chr6 (126665563-126664663)

	31-894, gnl\|bosTau2\|chr3 (29975918-29975046)
	31-894, gnl\|Hg17\|chr1 (110858823-110857951)
	31-894, gnl\|Mm7\|chr3 (106923016-106923888)

	56-688, gnl\|bosTau2\|chr15 (37813621-37812983)
	56-688, gnl\|Hg17\|chr11 (29989706-29989068)
	56-688, gnl\|Mm7\|chr2 (107146808-107147446)

	79-630, gnl\|bosTau2\|chr11 (64770346-64770888)
	79-630, gnl\|Hg17\|chr2 (11003822-11004364)
	79-630, gnl\|Mm7\|chr12 (17229851-17229309)