Non-Coding RNA Search

Ss1.1-Pig3-SRG8006A10.5

Sequence:


               
               CAAAGTCAATATCTTCTTCAAGGAGCTGAACTACAAAACCAACTCCGAGTCCCCCTCTGT
CACGATGGTCACCCTCCTCTCCAACCTGGGCAGCCAGTGGAGCCTGTGGTTCGGCTCCTC
CGTGCTGTCTGTGGTGGAGATGGCCGAGCTCATCTTTGACCTCCTGGTCATCACCTTCCT
CATGCTGCTCCGGCGGTTCCGAAGCCGATACTGGTCTCCAGGCCGAGGGGGCAGGGGTGC
CCAGGAAGTGGCCTCCACTCCACCCTCCTCCCTCCCCTCCCGTTTCTGCCCCCACCCCGC
ATCCCCCTCCTCATCCCCGCCAGGCCCTGCTGCCAACCCGGCCTTGTCAGCCCCTCCACC
TGCCTATGCCACCCTGGGCCCCTGCCCTGCTCCATCAGGCTCGGCAGCTGCCGGGTCCTC
TGCCCACCCTCTANGGGAGCCCTGAGAGGGAAGGACACTGTCCCCTCCCGGAGGCAGGCA
CTTCCCTTGGTGAGCANAGACTGGCCTTGTCAGGATTAAAGAATTGTTTGGGGCTTCCTG
TCCAGCTGCCCAGCTTTCCACCATTTGCTGGAGAACTCCTATGCATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAGTCAATATCTTCTTCAAGGAGCTGAACTACAAAACCAACTCCGAGTCCCCCTCTGT
CACGATGGTCACCCTCCTCTCCAACCTGGGCAGCCAGTGGAGCCTGTGGTTCGGCTCCTC
CGTGCTGTCTGTGGTGGAGATGGCCGAGCTCATCTTTGACCTCCTGGTCATCACCTTCCT
CATGCTGCTCCGGCGGTTCCGAAGCCGATACTGGTCTCCAGGCCGAGGGGGCAGGGGTGC
CCAGGAAGTGGCCTCCACTCCACCCTCCTCCCTCCCCTCCCGTTTCTGCCCCCACCCCGC
ATCCCCCTCCTCATCCCCGCCAGGCCCTGCTGCCAACCCGGCCTTGTCAGCCCCTCCACC
TGCCTATGCCACCCTGGGCCCCTGCCCTGCTCCATCAGGCTCGGCAGCTGCCGGGTCCTC
TGCCCACCCTCTANGGGAGCCCTGAGAGGGAAGGACACTGTCCCCTCCCGGAGGCAGGCA
CTTCCCTTGGTGAGCANAGACTGGCCTTGTCAGGATTAAAGAATTGTTTGGGGCTTCCTG
TCCAGCTGCCCAGCTTTCCACCATTTGCTGGAGAACTCCTATGCATCC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               46-317, - strand, RNAz p=0.987341
               

               
               358-555, - strand, RNAz p=0.995653

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               46-317, - strand, RNAz p=0.987341
               

               
               358-555, - strand, RNAz p=0.995653

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               61-159, + strand, RNAmicro p=0.938452
               

               
               417-519, + strand, RNAmicro p=0.903517

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               61-159, + strand, RNAmicro p=0.938452
               

               
               417-519, + strand, RNAmicro p=0.903517

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               46-555, gnl|bosTau2|chr5 (60778822-60779331)
               

               
               46-555, gnl|Hg17|chr12 (6327699-6327190)
               

               
               46-555, gnl|Mm7|chr6 (125369983-125370463)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-555, gnl|bosTau2|chr5 (60778822-60779331)
               

               
               46-555, gnl|Hg17|chr12 (6327699-6327190)
               

               
               46-555, gnl|Mm7|chr6 (125369983-125370463)

	46-317, - strand, RNAz p=0.987341
	358-555, - strand, RNAz p=0.995653

	61-159, + strand, RNAmicro p=0.938452
	417-519, + strand, RNAmicro p=0.903517

	46-555, gnl\|bosTau2\|chr5 (60778822-60779331)
	46-555, gnl\|Hg17\|chr12 (6327699-6327190)
	46-555, gnl\|Mm7\|chr6 (125369983-125370463)