Ss1.1-Pig3-SRG8006C04.3
|
GGCAGGTCCCTTCTGGCCACAATGCAGACCTCCAGCCCTGCCTTGGTTATCATCCAGGCA
AATGCTTGAGACTCCTGTTCCTTTTGGCCAGGTCCAGCCCTCCCATCCTTGCTGGGGCCA
CATGTCTTATACTCATCTGCTGAATCCTCGCTATGCTTGCTGAGAAAGTTGGGAGGGAAG
GGTGCCCACAGCTCTTTGCACATATGGCGGCCAGGATGCCCAGCCCCGTACCGTCATTAC
CAGATGGTGGCTCTGGTCTGTCCCACTGTACTGAGCTCCAAGATGGAAAACACTGTCTGG
TTGAAGCCGGCTTGGTGCAGAACAGGTGTTTAGTAAATGTTGAGTGGATCTACCAATTCG
TACCACCTGCTGTGTGCCGAGCACCGAGGAGGAAGAGCAAATGGCCAGGGGGAGACTTTG
TTCTCAAGATGGCAGAGACGAGAGTGGCTTAGCAGTTGAGGACTTGATGTTGTCATGTGG
GCGCAGCCAAGATAAATAAATAAATCAACTCAGTGGGAATATTTGTATATTAAAAAAAAA
AAGGTGGCAGAGCAAGACTGAAAAGAAGGTCCTTTCAGTTCTGCCTCCCTCTACCTCCTT
GCTTTCTGGAGGATTTTAAAATGACTTCCTTGTAAATTCTTCACACACTCATTTAGCAAA
GATCTTTTGGAAGCTGAGGCCTCACGTGTGGCCTGCAGATGTGTTTTGTTTGGCTGAACA
GTATTTTTAGTATTTTTTTTTAATTTGAATGCCTTTGGCATTCAGCCCAACCGAAAGTCA
TAAGAGATTCTTTCACTGTGGCCATAGAAACACTCTATACCTTATTTTCTGCCCCTCCCA
TTATAGTTGGACTTGTTTGTTGACTTTCTCTTTATGTTATATTCTGTACAGTTAGAAATA
AAGCAGTCCATC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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GGCAGGTCCCTTCTGGCCACAATGCAGACCTCCAGCCCTGCCTTGGTTATCATCCAGGCA
AATGCTTGAGACTCCTGTTCCTTTTGGCCAGGTCCAGCCCTCCCATCCTTGCTGGGGCCA
CATGTCTTATACTCATCTGCTGAATCCTCGCTATGCTTGCTGAGAAAGTTGGGAGGGAAG
GGTGCCCACAGCTCTTTGCACATATGGCGGCCAGGATGCCCAGCCCCGTACCGTCATTAC
CAGATGGTGGCTCTGGTCTGTCCCACTGTACTGAGCTCCAAGATGGAAAACACTGTCTGG
TTGAAGCCGGCTTGGTGCAGAACAGGTGTTTAGTAAATGTTGAGTGGATCTACCAATTCG
TACCACCTGCTGTGTGCCGAGCACCGAGGAGGAAGAGCAAATGGCCAGGGGGAGACTTTG
TTCTCAAGATGGCAGAGACGAGAGTGGCTTAGCAGTTGAGGACTTGATGTTGTCATGTGG
GCGCAGCCAAGATAAATAAATAAATCAACTCAGTGGGAATATTTGTATATTAAAAAAAAA
AAGGTGGCAGAGCAAGACTGAAAAGAAGGTCCTTTCAGTTCTGCCTCCCTCTACCTCCTT
GCTTTCTGGAGGATTTTAAAATGACTTCCTTGTAAATTCTTCACACACTCATTTAGCAAA
GATCTTTTGGAAGCTGAGGCCTCACGTGTGGCCTGCAGATGTGTTTTGTTTGGCTGAACA
GTATTTTTAGTATTTTTTTTTAATTTGAATGCCTTTGGCATTCAGCCCAACCGAAAGTCA
TAAGAGATTCTTTCACTGTGGCCATAGAAACACTCTATACCTTATTTTCTGCCCCTCCCA
TTATAGTTGGACTTGTTTGTTGACTTTCTCTTTATGTTATATTCTGTACAGTTAGAAATA
AAGCAGTCCATC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
3-429, gnl|bosTau2|chr13 (55704333-55704748) |
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3-429, gnl|canFam2|chr24 (35450186-35450643) |
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3-429, gnl|dasNov1|scaffold_6432 (6206-5774) |
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3-429, gnl|echTel1|scaffold_306533 (8687-8247) |
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3-429, gnl|hg17|chr20 (43155353-43155822) |
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3-429, gnl|Hg17|chr20 (43155864-43155423) |
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3-429, gnl|loxAfr1|scaffold_95059 (8199-8647) |
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3-429, gnl|mm7|chr2 (163903957-163904408) |
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3-429, gnl|Mm7|chr2 (163904441-163904032) |
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3-429, gnl|oryCun1|scaffold_123204 (3224-3631) |
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3-429, gnl|panTro1|chr21 (45639888-45640356) |
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3-429, gnl|rheMac2|chr10 (19344254-19343790) |
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3-429, gnl|rn3|chr3 (155008901-155009335) |
| |
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578-739, gnl|bosTau2|chr13 (55704778-55704944) |
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578-739, gnl|Hg17|chr20 (43155397-43155217) |
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578-739, gnl|Mm7|chr2 (163903992-163903656) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-429, gnl|bosTau2|chr13 (55704333-55704748) |
|
3-429, gnl|canFam2|chr24 (35450186-35450643) |
|
3-429, gnl|dasNov1|scaffold_6432 (6206-5774) |
|
3-429, gnl|echTel1|scaffold_306533 (8687-8247) |
|
3-429, gnl|hg17|chr20 (43155353-43155822) |
|
3-429, gnl|Hg17|chr20 (43155864-43155423) |
|
3-429, gnl|loxAfr1|scaffold_95059 (8199-8647) |
|
3-429, gnl|mm7|chr2 (163903957-163904408) |
|
3-429, gnl|Mm7|chr2 (163904441-163904032) |
|
3-429, gnl|oryCun1|scaffold_123204 (3224-3631) |
|
3-429, gnl|panTro1|chr21 (45639888-45640356) |
|
3-429, gnl|rheMac2|chr10 (19344254-19343790) |
|
3-429, gnl|rn3|chr3 (155008901-155009335) |
| |
|
578-739, gnl|bosTau2|chr13 (55704778-55704944) |
|
578-739, gnl|Hg17|chr20 (43155397-43155217) |
|
578-739, gnl|Mm7|chr2 (163903992-163903656) |
