Non-Coding RNA Search

Ss1.1-Pig3-SRG8006C12.3

Sequence:


               
               GTGATATTCCCTAAAATGGGCCGAATTCAGCAGCCCATTCGAGTGACTGACTAATGGCAG
CTGAAAGGGTTGTGCATAATGGAGATAGCCTATTCCAATTGCTTGGATCGCTGGGCACTG
CTACTCTCTTTACATGACGATTCTGGGTCTGTCGTGGTTGTAAGTTTGATTTCCTCTGCG
TGCCTGTCTTCCACCCGCGTTTCAAGAGGGAGTTCACTCATGAACCTGCTAAGAATCGGC
CGGGTCCCCATACACGATCAGACCTACTGCTGTCAGGAAGGGGTAGGGACCATCCCACAT
GCCCCTTAATTATTAGAGGCAGTAACAACTTATGTTTTATCAGTGCCTTCTTCCTCTTCC
TTTCTTGACCTGGATGTATTTGTTCAACCCTGGGATATGGATAACTCTTGTTCTCTCCTT
GCTTACTGCTCAAAGCCTTATTTTCCTATTCTGCATCAGGCTTTCCTGTATCTGTGATAG
AAAAAGCCTTTTGTCTCTCATCTCTACTATTCCCTGTTAAGAAATAGAAATTGAATGCAT
AAAGTGATGAACCTCACTCAGTCTTTGTCTTTCTTGGGTTGGGGAGTGCAGACTGGAATA
CACTAATTGTGGGCAAGCTTTCCCCATGGATTCGTCCAGACTCAAAAGTGGAGAAGATCC
GCAGGAACTATGAGGCGGTAAGACTGACATCTTCACCGAATCTTTATAAAGATCAGATCT
GTAAACAACCTGGATGGGGAGAACAGATTTTTCCCCTCCATAACTTAGTAAATCTGATGT
AATGCACTTAAAGCTGTTTGAGGAGTTCCCCTTGTGGCTTAGTGGTTAATGAATCAAACT
AGCATCCAGTGGGGGAAAAAACTGTAACTGCAATGTATACATATAAGGATGACCTGACCC
CCTTGCTGTACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGATATTCCCTAAAATGGGCCGAATTCAGCAGCCCATTCGAGTGACTGACTAATGGCAG
CTGAAAGGGTTGTGCATAATGGAGATAGCCTATTCCAATTGCTTGGATCGCTGGGCACTG
CTACTCTCTTTACATGACGATTCTGGGTCTGTCGTGGTTGTAAGTTTGATTTCCTCTGCG
TGCCTGTCTTCCACCCGCGTTTCAAGAGGGAGTTCACTCATGAACCTGCTAAGAATCGGC
CGGGTCCCCATACACGATCAGACCTACTGCTGTCAGGAAGGGGTAGGGACCATCCCACAT
GCCCCTTAATTATTAGAGGCAGTAACAACTTATGTTTTATCAGTGCCTTCTTCCTCTTCC
TTTCTTGACCTGGATGTATTTGTTCAACCCTGGGATATGGATAACTCTTGTTCTCTCCTT
GCTTACTGCTCAAAGCCTTATTTTCCTATTCTGCATCAGGCTTTCCTGTATCTGTGATAG
AAAAAGCCTTTTGTCTCTCATCTCTACTATTCCCTGTTAAGAAATAGAAATTGAATGCAT
AAAGTGATGAACCTCACTCAGTCTTTGTCTTTCTTGGGTTGGGGAGTGCAGACTGGAATA
CACTAATTGTGGGCAAGCTTTCCCCATGGATTCGTCCAGACTCAAAAGTGGAGAAGATCC
GCAGGAACTATGAGGCGGTAAGACTGACATCTTCACCGAATCTTTATAAAGATCAGATCT
GTAAACAACCTGGATGGGGAGAACAGATTTTTCCCCTCCATAACTTAGTAAATCTGATGT
AATGCACTTAAAGCTGTTTGAGGAGTTCCCCTTGTGGCTTAGTGGTTAATGAATCAAACT
AGCATCCAGTGGGGGAAAAAACTGTAACTGCAATGTATACATATAAGGATGACCTGACCC
CCTTGCTGTACA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               278-395, - strand, RNAz p=0.50873
               

               
               670-802, + strand, RNAz p=0.735454

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               278-395, - strand, RNAz p=0.50873
               

               
               670-802, + strand, RNAz p=0.735454

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-802, gnl|bosTau2|chr10 (14107623-14108412)
               

               
               1-802, gnl|Hg17|chr14 (22467821-22466756)
               

               
               1-802, gnl|Mm7|chr14 (49384498-49383818)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-802, gnl|bosTau2|chr10 (14107623-14108412)
               

               
               1-802, gnl|Hg17|chr14 (22467821-22466756)
               

               
               1-802, gnl|Mm7|chr14 (49384498-49383818)

	278-395, - strand, RNAz p=0.50873
	670-802, + strand, RNAz p=0.735454

	1-802, gnl\|bosTau2\|chr10 (14107623-14108412)
	1-802, gnl\|Hg17\|chr14 (22467821-22466756)
	1-802, gnl\|Mm7\|chr14 (49384498-49383818)