Non-Coding RNA Search

Ss1.1-Pig3-SRG8006E11.5

Sequence:


               
               CTTTGATAAGAAACTCTGCTCCAACTTAGTAACAGCAAGCAGGGCCGCAGATGGCGGGAT
CTGAAATCAGAGTTCTCCCTGGGGATTTTCAACTCAAAGAGGCAGGCATCTATAGCAAAG
AGTAGGCTGCTCAGGGTAGGTACGGAGTGGGCCGCTTCACTGCAACCCATGCCATCCTGA
AAATTGGAGTTAGTTTTAGTAACGACATTAAGATTTTGTAATGTAATGCCCATCCTCAAA
TATGTGGGTCATCCGAGTTGCACCCAGGTTCTAGTTTTCAAATTGTGGGTCCCAGAACCA
GCAGCATAAGCATCACTTGGGAACTCTTTTGACACGCACCTTCTCAGCCCTACCCCCATG
AGAAACTCCAGGGCTGGGGCCCAGCGATTGTTTTAATAAGCCTGCAGGTGACTGTGATGC
TGCTAAAGCTCCAGAACCACCGCTTTCCTCTCCCTCGTGAAGCCTTGCCTTGGCAGTTCT
GCTGTGATCACAGGCCAGGCCTGTGATCTGGCTTGGCTCTAACCACCCTATTGGAAATTC
GATACATTCTGGCATCAGGCCTCTGGTTGCCAGGGAGTTACATTGTTCAAAGCCTCGGGT
TCTCTGACCCCTACTATAGTTTTTGCTTTTTTCTTGAAACCTCCGAAGTGGGTGTTTGGT
TACACATGCTTAAAATATTTTCCAAGTTGAAGGCCTGATGGCCACGCCCTGTGGTGCAGG
ACTCTGGGTCTTCAAGTGCCCATTTGTTTTTGTAAAAGACTAGACCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGATAAGAAACTCTGCTCCAACTTAGTAACAGCAAGCAGGGCCGCAGATGGCGGGAT
CTGAAATCAGAGTTCTCCCTGGGGATTTTCAACTCAAAGAGGCAGGCATCTATAGCAAAG
AGTAGGCTGCTCAGGGTAGGTACGGAGTGGGCCGCTTCACTGCAACCCATGCCATCCTGA
AAATTGGAGTTAGTTTTAGTAACGACATTAAGATTTTGTAATGTAATGCCCATCCTCAAA
TATGTGGGTCATCCGAGTTGCACCCAGGTTCTAGTTTTCAAATTGTGGGTCCCAGAACCA
GCAGCATAAGCATCACTTGGGAACTCTTTTGACACGCACCTTCTCAGCCCTACCCCCATG
AGAAACTCCAGGGCTGGGGCCCAGCGATTGTTTTAATAAGCCTGCAGGTGACTGTGATGC
TGCTAAAGCTCCAGAACCACCGCTTTCCTCTCCCTCGTGAAGCCTTGCCTTGGCAGTTCT
GCTGTGATCACAGGCCAGGCCTGTGATCTGGCTTGGCTCTAACCACCCTATTGGAAATTC
GATACATTCTGGCATCAGGCCTCTGGTTGCCAGGGAGTTACATTGTTCAAAGCCTCGGGT
TCTCTGACCCCTACTATAGTTTTTGCTTTTTTCTTGAAACCTCCGAAGTGGGTGTTTGGT
TACACATGCTTAAAATATTTTCCAAGTTGAAGGCCTGATGGCCACGCCCTGTGGTGCAGG
ACTCTGGGTCTTCAAGTGCCCATTTGTTTTTGTAAAAGACTAGACCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               117-227, - strand, RNAz p=0.9953

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-227, - strand, RNAz p=0.9953

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-227, gnl|bosTau2|chr4 (36775397-36775162)
               

               
               1-227, gnl|Hg17|chr7 (29955067-29955255)
               


               
               405-768, gnl|bosTau2|chr4 (36773942-36773591)
               

               
               405-768, gnl|Hg17|chr7 (29955550-29955895)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-227, gnl|bosTau2|chr4 (36775397-36775162)
               

               
               1-227, gnl|Hg17|chr7 (29955067-29955255)
               


               
               405-768, gnl|bosTau2|chr4 (36773942-36773591)
               

               
               405-768, gnl|Hg17|chr7 (29955550-29955895)

	1-227, gnl\|bosTau2\|chr4 (36775397-36775162)
	1-227, gnl\|Hg17\|chr7 (29955067-29955255)

	405-768, gnl\|bosTau2\|chr4 (36773942-36773591)
	405-768, gnl\|Hg17\|chr7 (29955550-29955895)