Ss1.1-Pig3-SRG8006F22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTCTTTAAAGCCTATGGAGTCCTCATGGAAGAGCGCATCCAGGATGCCATCAGCAGCCT GGAGAGCATCCGGAATCACCCAGACGTGTCCCTGTGCTCCACCATGGCCCTCATTTATGC TCACAAGTGCTGTGAAACCATCGACCGAGAGGCGATTCATGAGCTTGAGAGTAGCCTGAA GGAAATCCGCAAGACAGCCAGCGGCACTGCACTGTACCATGCCGGCCTCTTCCTCTGGCT CATAGGCTGCCATGACAAGGCCAAGGAATACACTGATCGCCTGTTGAAGGTTTCCAGCAG CTCCAGAGAGGGCTGCATGCTCAGAGGCTGGGTGGACCTGAGCTCATACAAGCCCCACAC GGTGAAGAAGTCCATCAAGTACCTGGAGCAAGGCATGCAGGACACGAAAGATGTCCTGGG GCTGATGGGAAAGGCAAAGTACTTCATGATGCTGCAGAACTACTCGGGGGCCCTGGAGGT GGTGAATCAAATCACTGTCACCTCGGGGAGCTTCCTGCCCGCCTTGGTCCTAAAGATGCA GCTGTTTTTGGCCCGGCAGGACTGGGAACAGACTGTAGAAACAGGACACAGAATCCTGGA AAAAGATGAAAGCAACATTGATGCCTGCCAAATTCTAGCTGTGCATGAGCTTGCAAGAGA AGGGAACATAACCACAGCTGCCGAGCACGTTAGAAATATGATTAACGCACTGGAGACAAG AGAGCCCCAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTCTTTAAAGCCTATGGAGTCCTCATGGAAGAGCGCATCCAGGATGCCATCAGCAGCCT GGAGAGCATCCGGAATCACCCAGACGTGTCCCTGTGCTCCACCATGGCCCTCATTTATGC TCACAAGTGCTGTGAAACCATCGACCGAGAGGCGATTCATGAGCTTGAGAGTAGCCTGAA GGAAATCCGCAAGACAGCCAGCGGCACTGCACTGTACCATGCCGGCCTCTTCCTCTGGCT CATAGGCTGCCATGACAAGGCCAAGGAATACACTGATCGCCTGTTGAAGGTTTCCAGCAG CTCCAGAGAGGGCTGCATGCTCAGAGGCTGGGTGGACCTGAGCTCATACAAGCCCCACAC GGTGAAGAAGTCCATCAAGTACCTGGAGCAAGGCATGCAGGACACGAAAGATGTCCTGGG GCTGATGGGAAAGGCAAAGTACTTCATGATGCTGCAGAACTACTCGGGGGCCCTGGAGGT GGTGAATCAAATCACTGTCACCTCGGGGAGCTTCCTGCCCGCCTTGGTCCTAAAGATGCA GCTGTTTTTGGCCCGGCAGGACTGGGAACAGACTGTAGAAACAGGACACAGAATCCTGGA AAAAGATGAAAGCAACATTGATGCCTGCCAAATTCTAGCTGTGCATGAGCTTGCAAGAGA AGGGAACATAACCACAGCTGCCGAGCACGTTAGAAATATGATTAACGCACTGGAGACAAG AGAGCCCCAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 31-141, + strand, RNAz p=0.798363 | |
| 31-141, - strand, RNAz p=0.798363 | |
| 31-132, + strand, RNAz p=0.769856 | |
| 31-132, - strand, RNAz p=0.769856 | |
| 471-591, + strand, RNAz p=0.556424 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 31-141, + strand, RNAz p=0.798363 | |
| 31-141, - strand, RNAz p=0.798363 | |
| 31-132, + strand, RNAz p=0.769856 | |
| 31-132, - strand, RNAz p=0.769856 | |
| 471-591, + strand, RNAz p=0.556424 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AJ487015, + |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 31-141, gnl|bosTau2|chr22 (9852627-9852737) | |
| 31-141, gnl|canFam2|chr23 (11792907-11793043) | |
| 31-141, gnl|danRer3|chr24 (32905424-32905302) | |
| 31-141, gnl|dasNov1|scaffold_113248 (8640-8774) | |
| 31-141, gnl|echTel1|scaffold_305353 (9550-9415) | |
| 31-141, gnl|fr1|chrUn (6933437-6933569) | |
| 31-141, gnl|hg17|chr3 (39126510-39126645) | |
| 31-141, gnl|Hg17|chr3 (39126522-39126632) | |
| 31-141, gnl|mm7|chr9 (119636297-119636432) | |
| 31-141, gnl|Mm7|chr9 (119636309-119636419) | |
| 31-141, gnl|monDom2|scaffold_128 (2743123-2743258) | |
| 31-141, gnl|oryCun1|scaffold_181867 (5781-5916) | |
| 31-141, gnl|panTro1|chr2 (40237353-40237488) | |
| 31-141, gnl|rheMac2|chr2 (97410434-97410299) | |
| 31-141, gnl|rn3|chr8 (124918070-124918205) | |
| 31-141, gnl|xenTro1|scaffold_647 (578337-578215) | |
| 143-311, gnl|bosTau2|chr22 (9853405-9853573) | |
| 143-311, gnl|canFam2|chr23 (11793613-11793789) | |
| 143-311, gnl|danRer3|chr24 (32903324-32903160) | |
| 143-311, gnl|dasNov1|scaffold_196265 (362-538) | |
| 143-311, gnl|echTel1|scaffold_305353 (8598-8422) | |
| 143-311, gnl|fr1|chrUn (6933655-6933825) | |
| 143-311, gnl|hg17|chr3 (39127344-39127520) | |
| 143-311, gnl|Hg17|chr3 (39127345-39127513) | |
| 143-311, gnl|loxAfr1|scaffold_6352 (118219-118391) | |
| 143-311, gnl|mm7|chr9 (119637026-119637198) | |
| 143-311, gnl|Mm7|chr9 (119637027-119637195) | |
| 143-311, gnl|monDom2|scaffold_128 (2746246-2746420) | |
| 143-311, gnl|oryCun1|scaffold_181867 (6424-6596) | |
| 143-311, gnl|panTro1|chr2 (40238213-40238389) | |
| 143-311, gnl|rheMac2|chr2 (97409602-97409426) | |
| 143-311, gnl|rn3|chr8 (124918937-124919109) | |
| 143-311, gnl|tetNig1|chr2 (11769838-11769667) | |
| 143-311, gnl|xenTro1|scaffold_204 (319230-319058) | |
| 432-591, gnl|bosTau2|chr22 (9860093-9860252) | |
| 432-591, gnl|canFam2|chr23 (11797275-11797440) | |
| 432-591, gnl|danRer3|chr24 (32900746-32900577) | |
| 432-591, gnl|echTel1|scaffold_305353 (3098-2933) | |
| 432-591, gnl|fr1|chrUn (6934181-6934362) | |
| 432-591, gnl|hg17|chr3 (39131078-39131263) | |
| 432-591, gnl|Hg17|chr3 (39131078-39131237) | |
| 432-591, gnl|loxAfr1|scaffold_63611 (6343-6505) | |
| 432-591, gnl|mm7|chr9 (119639710-119639893) | |
| 432-591, gnl|Mm7|chr9 (119639710-119639869) | |
| 432-591, gnl|monDom2|scaffold_128 (2747548-2747713) | |
| 432-591, gnl|oryCun1|scaffold_181867 (8720-8885) | |
| 432-591, gnl|panTro1|chr2 (40241942-40242127) | |
| 432-591, gnl|rheMac2|chr2 (97405903-97405718) | |
| 432-591, gnl|rn3|chr8 (124922341-124922506) | |
| 432-591, gnl|tetNig1|chr2 (11769322-11769182) | |
| 432-591, gnl|xenTro1|scaffold_204 (316700-316521) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 31-141, gnl|bosTau2|chr22 (9852627-9852737) | |
| 31-141, gnl|canFam2|chr23 (11792907-11793043) | |
| 31-141, gnl|danRer3|chr24 (32905424-32905302) | |
| 31-141, gnl|dasNov1|scaffold_113248 (8640-8774) | |
| 31-141, gnl|echTel1|scaffold_305353 (9550-9415) | |
| 31-141, gnl|fr1|chrUn (6933437-6933569) | |
| 31-141, gnl|hg17|chr3 (39126510-39126645) | |
| 31-141, gnl|Hg17|chr3 (39126522-39126632) | |
| 31-141, gnl|mm7|chr9 (119636297-119636432) | |
| 31-141, gnl|Mm7|chr9 (119636309-119636419) | |
| 31-141, gnl|monDom2|scaffold_128 (2743123-2743258) | |
| 31-141, gnl|oryCun1|scaffold_181867 (5781-5916) | |
| 31-141, gnl|panTro1|chr2 (40237353-40237488) | |
| 31-141, gnl|rheMac2|chr2 (97410434-97410299) | |
| 31-141, gnl|rn3|chr8 (124918070-124918205) | |
| 31-141, gnl|xenTro1|scaffold_647 (578337-578215) | |
| 143-311, gnl|bosTau2|chr22 (9853405-9853573) | |
| 143-311, gnl|canFam2|chr23 (11793613-11793789) | |
| 143-311, gnl|danRer3|chr24 (32903324-32903160) | |
| 143-311, gnl|dasNov1|scaffold_196265 (362-538) | |
| 143-311, gnl|echTel1|scaffold_305353 (8598-8422) | |
| 143-311, gnl|fr1|chrUn (6933655-6933825) | |
| 143-311, gnl|hg17|chr3 (39127344-39127520) | |
| 143-311, gnl|Hg17|chr3 (39127345-39127513) | |
| 143-311, gnl|loxAfr1|scaffold_6352 (118219-118391) | |
| 143-311, gnl|mm7|chr9 (119637026-119637198) | |
| 143-311, gnl|Mm7|chr9 (119637027-119637195) | |
| 143-311, gnl|monDom2|scaffold_128 (2746246-2746420) | |
| 143-311, gnl|oryCun1|scaffold_181867 (6424-6596) | |
| 143-311, gnl|panTro1|chr2 (40238213-40238389) | |
| 143-311, gnl|rheMac2|chr2 (97409602-97409426) | |
| 143-311, gnl|rn3|chr8 (124918937-124919109) | |
| 143-311, gnl|tetNig1|chr2 (11769838-11769667) | |
| 143-311, gnl|xenTro1|scaffold_204 (319230-319058) | |
| 432-591, gnl|bosTau2|chr22 (9860093-9860252) | |
| 432-591, gnl|canFam2|chr23 (11797275-11797440) | |
| 432-591, gnl|danRer3|chr24 (32900746-32900577) | |
| 432-591, gnl|echTel1|scaffold_305353 (3098-2933) | |
| 432-591, gnl|fr1|chrUn (6934181-6934362) | |
| 432-591, gnl|hg17|chr3 (39131078-39131263) | |
| 432-591, gnl|Hg17|chr3 (39131078-39131237) | |
| 432-591, gnl|loxAfr1|scaffold_63611 (6343-6505) | |
| 432-591, gnl|mm7|chr9 (119639710-119639893) | |
| 432-591, gnl|Mm7|chr9 (119639710-119639869) | |
| 432-591, gnl|monDom2|scaffold_128 (2747548-2747713) | |
| 432-591, gnl|oryCun1|scaffold_181867 (8720-8885) | |
| 432-591, gnl|panTro1|chr2 (40241942-40242127) | |
| 432-591, gnl|rheMac2|chr2 (97405903-97405718) | |
| 432-591, gnl|rn3|chr8 (124922341-124922506) | |
| 432-591, gnl|tetNig1|chr2 (11769322-11769182) | |
| 432-591, gnl|xenTro1|scaffold_204 (316700-316521) |