Ss1.1-Pig3-SRG8006L04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGAGGGCCCTGGCACACCCCCGGCCAAGCAGAGCACCACCAGCTCCAGGATAATGGGAGA TGCCACCAAGAAGACCCCAGAGCCAAGAGTCGTCTTCATCAAAAAGTCCCAGCTGGAGCT TGGAGTGCACTTATGTGGTGGGAACCTGCACGGGGTGTTTGTGGCTGAGGTGGAGGATGA CAGTCCTGCCAAGGGCCCTGATGGCCTTGTGCCTGGGGACCTCATCCTCGAGTATGGTGG TCTGGATGTGCGCAGCAAGACAGTGGAGGAGGTCTATGTGGAGATGCTAAAGCCCAAGGA TGGCGTCCGCCTGAAGGTGCAGTACCGCCCCGAGGAGTTCACCAAGGTCAAGGGCCTGCC TGGTGACAGCTTCTACATCAGGGCCCTGTATGAGCGGCTAGCAGAAGTGGAGCATGAGCT GAGCTTTAAGAAAGACGACATCCTCTATGTTGATGACACCTTGCCCCAGGGCACATTTGG GTCCTGGATGGCCTGGCAGCTGGATGAGAACGCCCAGAAGATCCAGCGCGGGCAGATCCC CAGCAAATATGTGATGGACCAAGAATTCTCCCGGAGGCTTAGCATGTCTGAAGTCAAAGA TGACAATGCTGCAAAGACGCTCTCGGCAGCTGCACGCAGATCCTTCTTTCGAAGGAAACA TAAGCACAAACGCAGTGGGTCCAAAGATGGGAAAGACCTCCTTGCCTTGGACACCTTTTC TAATGACTCCATTCCACTCTTTGAAGATCCGGTGAGCCTTGCCTATCAGCGGGTCCAGAA GGTGGACTGCACCTCCCTGAGGCCCGTCCTGATTCTGGGGCCGTTACTGGATGTGGTGAA GGAAATGCTGGTGAACGAGGCACCTGGCAAGTTCTGCAGATGTCCCCTTGAGGTGATGAA GGCCTCCCAGCAGGCCATTGAGCGGGGTGTCAAAGACTGCCTATTTGTTGACTTCAAGCG GCGGAGTGGCCACTTTGATGTGACCACAGTGGCTTCCATAAAGGAGATCACAGAAAAGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGAGGGCCCTGGCACACCCCCGGCCAAGCAGAGCACCACCAGCTCCAGGATAATGGGAGA TGCCACCAAGAAGACCCCAGAGCCAAGAGTCGTCTTCATCAAAAAGTCCCAGCTGGAGCT TGGAGTGCACTTATGTGGTGGGAACCTGCACGGGGTGTTTGTGGCTGAGGTGGAGGATGA CAGTCCTGCCAAGGGCCCTGATGGCCTTGTGCCTGGGGACCTCATCCTCGAGTATGGTGG TCTGGATGTGCGCAGCAAGACAGTGGAGGAGGTCTATGTGGAGATGCTAAAGCCCAAGGA TGGCGTCCGCCTGAAGGTGCAGTACCGCCCCGAGGAGTTCACCAAGGTCAAGGGCCTGCC TGGTGACAGCTTCTACATCAGGGCCCTGTATGAGCGGCTAGCAGAAGTGGAGCATGAGCT GAGCTTTAAGAAAGACGACATCCTCTATGTTGATGACACCTTGCCCCAGGGCACATTTGG GTCCTGGATGGCCTGGCAGCTGGATGAGAACGCCCAGAAGATCCAGCGCGGGCAGATCCC CAGCAAATATGTGATGGACCAAGAATTCTCCCGGAGGCTTAGCATGTCTGAAGTCAAAGA TGACAATGCTGCAAAGACGCTCTCGGCAGCTGCACGCAGATCCTTCTTTCGAAGGAAACA TAAGCACAAACGCAGTGGGTCCAAAGATGGGAAAGACCTCCTTGCCTTGGACACCTTTTC TAATGACTCCATTCCACTCTTTGAAGATCCGGTGAGCCTTGCCTATCAGCGGGTCCAGAA GGTGGACTGCACCTCCCTGAGGCCCGTCCTGATTCTGGGGCCGTTACTGGATGTGGTGAA GGAAATGCTGGTGAACGAGGCACCTGGCAAGTTCTGCAGATGTCCCCTTGAGGTGATGAA GGCCTCCCAGCAGGCCATTGAGCGGGGTGTCAAAGACTGCCTATTTGTTGACTTCAAGCG GCGGAGTGGCCACTTTGATGTGACCACAGTGGCTTCCATAAAGGAGATCACAGAAAAGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 554-670, - strand, RNAz p=0.851582 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 554-670, - strand, RNAz p=0.851582 |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 47-232, gnl|bosTau2|chr28 (26496295-26496110) | |
| 47-232, gnl|Hg17|chr10 (79239496-79239311) | |
| 47-232, gnl|Mm7|chr14 (21811061-21810876) | |
| 379-553, gnl|bosTau2|chr28 (26494573-26494399) | |
| 379-553, gnl|canFam2|chr4 (30910869-30911088) | |
| 379-553, gnl|danRer3|chr13 (13621745-13621564) | |
| 379-553, gnl|dasNov1|scaffold_66 (203417-203204) | |
| 379-553, gnl|echTel1|scaffold_47805 (595-813) | |
| 379-553, gnl|fr1|chrUn (59426674-59426466) | |
| 379-553, gnl|galGal2|chr6 (12542737-12542518) | |
| 379-553, gnl|hg17|chr10 (79236510-79236729) | |
| 379-553, gnl|Hg17|chr10 (79236695-79236521) | |
| 379-553, gnl|loxAfr1|scaffold_188565 (1308-1090) | |
| 379-553, gnl|mm7|chr14 (21808806-21809027) | |
| 379-553, gnl|Mm7|chr14 (21808993-21808818) | |
| 379-553, gnl|monDom2|scaffold_14 (6415141-6415360) | |
| 379-553, gnl|oryCun1|scaffold_72967 (761-543) | |
| 379-553, gnl|panTro1|chr8 (80515523-80515742) | |
| 379-553, gnl|rheMac2|chr9 (59246291-59246072) | |
| 379-553, gnl|rn3|chr15 (194436-194216) | |
| 379-553, gnl|tetNig1|chr17 (6160845-6160669) | |
| 379-553, gnl|xenTro1|scaffold_249 (1136072-1136278) | |
| 554-746, gnl|bosTau2|chr28 (26493509-26493314) | |
| 554-746, gnl|canFam2|chr4 (30909836-30910085) | |
| 554-746, gnl|danRer3|chr13 (13624884-13624661) | |
| 554-746, gnl|dasNov1|scaffold_66 (204254-204004) | |
| 554-746, gnl|echTel1|scaffold_260866 (5525-5773) | |
| 554-746, gnl|fr1|chrUn (59427425-59427186) | |
| 554-746, gnl|galGal2|chr6 (12543467-12543253) | |
| 554-746, gnl|hg17|chr10 (79235419-79235665) | |
| 554-746, gnl|Hg17|chr10 (79235624-79235429) | |
| 554-746, gnl|mm7|chr14 (21806953-21807199) | |
| 554-746, gnl|Mm7|chr14 (21807154-21806962) | |
| 554-746, gnl|monDom2|scaffold_14 (6413791-6414000) | |
| 554-746, gnl|oryCun1|scaffold_72967 (1546-1318) | |
| 554-746, gnl|panTro1|chr8 (80514432-80514678) | |
| 554-746, gnl|rheMac2|chr9 (59247363-59247117) | |
| 554-746, gnl|rn3|chr15 (196384-196139) | |
| 554-746, gnl|tetNig1|chr17 (6161382-6161144) | |
| 554-746, gnl|xenTro1|scaffold_249 (1135540-1135763) | |
| 890-1018, gnl|bosTau2|chr28 (26487371-26487243) | |
| 890-1018, gnl|canFam2|chr4 (30902512-30902657) | |
| 890-1018, gnl|danRer3|chr9 (2079518-2079668) | |
| 890-1018, gnl|dasNov1|scaffold_66 (211698-211553) | |
| 890-1018, gnl|echTel1|scaffold_266498 (7431-7575) | |
| 890-1018, gnl|fr1|chrUn (59427891-59427754) | |
| 890-1018, gnl|galGal2|chr6 (12544683-12544549) | |
| 890-1018, gnl|hg17|chr10 (79225813-79225958) | |
| 890-1018, gnl|Hg17|chr10 (79225953-79225825) | |
| 890-1018, gnl|loxAfr1|scaffold_35263 (26460-26605) | |
| 890-1018, gnl|mm7|chr14 (21800885-21801030) | |
| 890-1018, gnl|Mm7|chr14 (21801025-21800897) | |
| 890-1018, gnl|monDom2|scaffold_14 (6412046-6412182) | |
| 890-1018, gnl|oryCun1|scaffold_72967 (7698-7553) | |
| 890-1018, gnl|panTro1|chr8 (80504273-80504418) | |
| 890-1018, gnl|rheMac2|chr9 (59256907-59256762) | |
| 890-1018, gnl|rn3|chr15 (203411-203266) | |
| 890-1018, gnl|tetNig1|chr17 (6161855-6161717) | |
| 890-1018, gnl|xenTro1|scaffold_249 (1133708-1133843) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 47-232, gnl|bosTau2|chr28 (26496295-26496110) | |
| 47-232, gnl|Hg17|chr10 (79239496-79239311) | |
| 47-232, gnl|Mm7|chr14 (21811061-21810876) | |
| 379-553, gnl|bosTau2|chr28 (26494573-26494399) | |
| 379-553, gnl|canFam2|chr4 (30910869-30911088) | |
| 379-553, gnl|danRer3|chr13 (13621745-13621564) | |
| 379-553, gnl|dasNov1|scaffold_66 (203417-203204) | |
| 379-553, gnl|echTel1|scaffold_47805 (595-813) | |
| 379-553, gnl|fr1|chrUn (59426674-59426466) | |
| 379-553, gnl|galGal2|chr6 (12542737-12542518) | |
| 379-553, gnl|hg17|chr10 (79236510-79236729) | |
| 379-553, gnl|Hg17|chr10 (79236695-79236521) | |
| 379-553, gnl|loxAfr1|scaffold_188565 (1308-1090) | |
| 379-553, gnl|mm7|chr14 (21808806-21809027) | |
| 379-553, gnl|Mm7|chr14 (21808993-21808818) | |
| 379-553, gnl|monDom2|scaffold_14 (6415141-6415360) | |
| 379-553, gnl|oryCun1|scaffold_72967 (761-543) | |
| 379-553, gnl|panTro1|chr8 (80515523-80515742) | |
| 379-553, gnl|rheMac2|chr9 (59246291-59246072) | |
| 379-553, gnl|rn3|chr15 (194436-194216) | |
| 379-553, gnl|tetNig1|chr17 (6160845-6160669) | |
| 379-553, gnl|xenTro1|scaffold_249 (1136072-1136278) | |
| 554-746, gnl|bosTau2|chr28 (26493509-26493314) | |
| 554-746, gnl|canFam2|chr4 (30909836-30910085) | |
| 554-746, gnl|danRer3|chr13 (13624884-13624661) | |
| 554-746, gnl|dasNov1|scaffold_66 (204254-204004) | |
| 554-746, gnl|echTel1|scaffold_260866 (5525-5773) | |
| 554-746, gnl|fr1|chrUn (59427425-59427186) | |
| 554-746, gnl|galGal2|chr6 (12543467-12543253) | |
| 554-746, gnl|hg17|chr10 (79235419-79235665) | |
| 554-746, gnl|Hg17|chr10 (79235624-79235429) | |
| 554-746, gnl|mm7|chr14 (21806953-21807199) | |
| 554-746, gnl|Mm7|chr14 (21807154-21806962) | |
| 554-746, gnl|monDom2|scaffold_14 (6413791-6414000) | |
| 554-746, gnl|oryCun1|scaffold_72967 (1546-1318) | |
| 554-746, gnl|panTro1|chr8 (80514432-80514678) | |
| 554-746, gnl|rheMac2|chr9 (59247363-59247117) | |
| 554-746, gnl|rn3|chr15 (196384-196139) | |
| 554-746, gnl|tetNig1|chr17 (6161382-6161144) | |
| 554-746, gnl|xenTro1|scaffold_249 (1135540-1135763) | |
| 890-1018, gnl|bosTau2|chr28 (26487371-26487243) | |
| 890-1018, gnl|canFam2|chr4 (30902512-30902657) | |
| 890-1018, gnl|danRer3|chr9 (2079518-2079668) | |
| 890-1018, gnl|dasNov1|scaffold_66 (211698-211553) | |
| 890-1018, gnl|echTel1|scaffold_266498 (7431-7575) | |
| 890-1018, gnl|fr1|chrUn (59427891-59427754) | |
| 890-1018, gnl|galGal2|chr6 (12544683-12544549) | |
| 890-1018, gnl|hg17|chr10 (79225813-79225958) | |
| 890-1018, gnl|Hg17|chr10 (79225953-79225825) | |
| 890-1018, gnl|loxAfr1|scaffold_35263 (26460-26605) | |
| 890-1018, gnl|mm7|chr14 (21800885-21801030) | |
| 890-1018, gnl|Mm7|chr14 (21801025-21800897) | |
| 890-1018, gnl|monDom2|scaffold_14 (6412046-6412182) | |
| 890-1018, gnl|oryCun1|scaffold_72967 (7698-7553) | |
| 890-1018, gnl|panTro1|chr8 (80504273-80504418) | |
| 890-1018, gnl|rheMac2|chr9 (59256907-59256762) | |
| 890-1018, gnl|rn3|chr15 (203411-203266) | |
| 890-1018, gnl|tetNig1|chr17 (6161855-6161717) | |
| 890-1018, gnl|xenTro1|scaffold_249 (1133708-1133843) |