Ss1.1-Pig3-SRG8006N14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGGTGATGGCCGGACCCATGGCTGCATTCAAATGGCAGCCGACCGTCAGCGAGCCAGTT AAAGACGCAGACCCTCATTTCCATCACTTCCTGCTCAGCCAAACCGAGAAGCCAGCTGTC TGTTACCAGGCAATCACAAAGAAGTTGAAAATATGTGAAGAGGAGACGGGGTCCACCTCC ATCCAGGCAGCAGACAGCACGGCTGTGAATGGCAGCATCACACCCACAGACAAAAAGATA GGATTTTTGGGTCTTGGCCTCATGGGAAGTGGCATCGTCTCCAACTTGTTGAAAATGGGT CACACAGTGACTGTCTGGAACAGGACCGCAGAGAAAGAGGGGGCCCGCCTAGGAAGAACC CCCGCTGAAGTCGTTTCAACTTGTGACATCACCTTTGCCTGTGTGTCGGATCCGAAGGCA GCGAAGGACCTGGTGCTGGGCCCCAGTGGTGTGCTGCAAGGGATCCGCCCTGGGAAGTGC TACGTGGACATGTCAACAGTGGACGCTGACACGGTCACCGAGTTGGCCCAGGTGATTGTG TCCAGGGGGGGCCGCTTTCTGGAAGCCCCGGTCTCAGGGAATCAGCAGCTTTCTAATGAT GGGATGTTGGTGATCTTAGCGGCCGGAGACAGGGGCTTGTATGAGGACTGCAGCAGCTGC TTCCAGGCAATGGGGAAGACCTCCTTCTTTATAGGTGAGGTCGGCAACGCAGCCAAGATG ATGCTCATTGTGAACATGGTCCAGGGCAGCTTCATGGCCACCATCGCTGAAGGGCTCACC CTGGCCCAAGTGACCGGCCAGTCCCAGCAGACACTTTTAGACATCCTCAATCAGGGACAG TTGGCCAGCATCTTCCTGGACCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGGTGATGGCCGGACCCATGGCTGCATTCAAATGGCAGCCGACCGTCAGCGAGCCAGTT AAAGACGCAGACCCTCATTTCCATCACTTCCTGCTCAGCCAAACCGAGAAGCCAGCTGTC TGTTACCAGGCAATCACAAAGAAGTTGAAAATATGTGAAGAGGAGACGGGGTCCACCTCC ATCCAGGCAGCAGACAGCACGGCTGTGAATGGCAGCATCACACCCACAGACAAAAAGATA GGATTTTTGGGTCTTGGCCTCATGGGAAGTGGCATCGTCTCCAACTTGTTGAAAATGGGT CACACAGTGACTGTCTGGAACAGGACCGCAGAGAAAGAGGGGGCCCGCCTAGGAAGAACC CCCGCTGAAGTCGTTTCAACTTGTGACATCACCTTTGCCTGTGTGTCGGATCCGAAGGCA GCGAAGGACCTGGTGCTGGGCCCCAGTGGTGTGCTGCAAGGGATCCGCCCTGGGAAGTGC TACGTGGACATGTCAACAGTGGACGCTGACACGGTCACCGAGTTGGCCCAGGTGATTGTG TCCAGGGGGGGCCGCTTTCTGGAAGCCCCGGTCTCAGGGAATCAGCAGCTTTCTAATGAT GGGATGTTGGTGATCTTAGCGGCCGGAGACAGGGGCTTGTATGAGGACTGCAGCAGCTGC TTCCAGGCAATGGGGAAGACCTCCTTCTTTATAGGTGAGGTCGGCAACGCAGCCAAGATG ATGCTCATTGTGAACATGGTCCAGGGCAGCTTCATGGCCACCATCGCTGAAGGGCTCACC CTGGCCCAAGTGACCGGCCAGTCCCAGCAGACACTTTTAGACATCCTCAATCAGGGACAG TTGGCCAGCATCTTCCTGGACCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 528-647, + strand, RNAz p=0.94745 | |
| 541-659, - strand, RNAz p=0.782283 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 528-647, + strand, RNAz p=0.94745 | |
| 541-659, - strand, RNAz p=0.782283 |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 237-337, gnl|bosTau2|chr25 (4718143-4718043) | |
| 237-337, gnl|canFam2|chr6 (39647018-39646913) | |
| 237-337, gnl|canFam2|chr6 (39646916-39647015) | |
| 237-337, gnl|danRer3|chr3 (32634455-32634350) | |
| 237-337, gnl|danRer3|chr3 (32634354-32634450) | |
| 237-337, gnl|dasNov1|scaffold_122360 (1712-1613) | |
| 237-337, gnl|dasNov1|scaffold_122360 (1613-1712) | |
| 237-337, gnl|echTel1|scaffold_219284 (877-982) | |
| 237-337, gnl|echTel1|scaffold_219284 (978-882) | |
| 237-337, gnl|fr1|chrUn (247465598-247465493) | |
| 237-337, gnl|fr1|chrUn (247465497-247465593) | |
| 237-337, gnl|galGal2|chrUn (38929193-38929088) | |
| 237-337, gnl|galGal2|chrUn (38929091-38929188) | |
| 237-337, gnl|hg17|chr16 (4807598-4807703) | |
| 237-337, gnl|Hg17|chr16 (4807699-4807599) | |
| 237-337, gnl|hg17|chr20 (47880176-47880275) | |
| 237-337, gnl|mm7|chr16 (4699867-4699972) | |
| 237-337, gnl|mm7|chr16 (4699968-4699870) | |
| 237-337, gnl|Mm7|chr16 (4699968-4699868) | |
| 237-337, gnl|monDom2|scaffold_17 (42660680-42660573) | |
| 237-337, gnl|monDom2|scaffold_17 (42660578-42660677) | |
| 237-337, gnl|oryCun1|scaffold_149256 (6086-6184) | |
| 237-337, gnl|oryCun1|scaffold_149256 (6185-6086) | |
| 237-337, gnl|panTro1|chr18 (4757815-4757920) | |
| 237-337, gnl|panTro1|chr21 (50581163-50581262) | |
| 237-337, gnl|rheMac2|chr10 (14654879-14654780) | |
| 237-337, gnl|rheMac2|chr20 (4987515-4987620) | |
| 237-337, gnl|rn3|chr10 (10671463-10671358) | |
| 237-337, gnl|rn3|chr10 (10671362-10671460) | |
| 237-337, gnl|tetNig1|chrUn_random (36593139-36593244) | |
| 237-337, gnl|tetNig1|chrUn_random (36593240-36593144) | |
| 237-337, gnl|xenTro1|scaffold_409 (295151-295047) | |
| 237-337, gnl|xenTro1|scaffold_409 (295050-295146) | |
| 528-696, gnl|bosTau2|chr25 (4712017-4711849) | |
| 528-696, gnl|canFam2|chr6 (39653047-39652859) | |
| 528-696, gnl|danRer3|chr3 (32635659-32635483) | |
| 528-696, gnl|dasNov1|scaffold_44315 (553-716) | |
| 528-696, gnl|echTel1|scaffold_278272 (40195-40378) | |
| 528-696, gnl|fr1|chrUn (247466880-247466698) | |
| 528-696, gnl|galGal2|chrUn (38931944-38931771) | |
| 528-696, gnl|hg17|chr16 (4802082-4802270) | |
| 528-696, gnl|Hg17|chr16 (4802254-4802086) | |
| 528-696, gnl|loxAfr1|scaffold_2336 (20252-20440) | |
| 528-696, gnl|mm7|chr16 (4692642-4692827) | |
| 528-696, gnl|Mm7|chr16 (4692814-4692646) | |
| 528-696, gnl|monDom2|scaffold_17 (42664865-42664677) | |
| 528-696, gnl|oryCun1|scaffold_149256 (5708-5870) | |
| 528-696, gnl|panTro1|chr18 (4752154-4752342) | |
| 528-696, gnl|rheMac2|chr20 (4980244-4980432) | |
| 528-696, gnl|rn3|chr10 (10676919-10676732) | |
| 528-696, gnl|tetNig1|chrUn_random (36591588-36591756) | |
| 528-696, gnl|xenTro1|scaffold_409 (298603-298424) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 237-337, gnl|bosTau2|chr25 (4718143-4718043) | |
| 237-337, gnl|canFam2|chr6 (39647018-39646913) | |
| 237-337, gnl|canFam2|chr6 (39646916-39647015) | |
| 237-337, gnl|danRer3|chr3 (32634455-32634350) | |
| 237-337, gnl|danRer3|chr3 (32634354-32634450) | |
| 237-337, gnl|dasNov1|scaffold_122360 (1712-1613) | |
| 237-337, gnl|dasNov1|scaffold_122360 (1613-1712) | |
| 237-337, gnl|echTel1|scaffold_219284 (877-982) | |
| 237-337, gnl|echTel1|scaffold_219284 (978-882) | |
| 237-337, gnl|fr1|chrUn (247465598-247465493) | |
| 237-337, gnl|fr1|chrUn (247465497-247465593) | |
| 237-337, gnl|galGal2|chrUn (38929193-38929088) | |
| 237-337, gnl|galGal2|chrUn (38929091-38929188) | |
| 237-337, gnl|hg17|chr16 (4807598-4807703) | |
| 237-337, gnl|Hg17|chr16 (4807699-4807599) | |
| 237-337, gnl|hg17|chr20 (47880176-47880275) | |
| 237-337, gnl|mm7|chr16 (4699867-4699972) | |
| 237-337, gnl|mm7|chr16 (4699968-4699870) | |
| 237-337, gnl|Mm7|chr16 (4699968-4699868) | |
| 237-337, gnl|monDom2|scaffold_17 (42660680-42660573) | |
| 237-337, gnl|monDom2|scaffold_17 (42660578-42660677) | |
| 237-337, gnl|oryCun1|scaffold_149256 (6086-6184) | |
| 237-337, gnl|oryCun1|scaffold_149256 (6185-6086) | |
| 237-337, gnl|panTro1|chr18 (4757815-4757920) | |
| 237-337, gnl|panTro1|chr21 (50581163-50581262) | |
| 237-337, gnl|rheMac2|chr10 (14654879-14654780) | |
| 237-337, gnl|rheMac2|chr20 (4987515-4987620) | |
| 237-337, gnl|rn3|chr10 (10671463-10671358) | |
| 237-337, gnl|rn3|chr10 (10671362-10671460) | |
| 237-337, gnl|tetNig1|chrUn_random (36593139-36593244) | |
| 237-337, gnl|tetNig1|chrUn_random (36593240-36593144) | |
| 237-337, gnl|xenTro1|scaffold_409 (295151-295047) | |
| 237-337, gnl|xenTro1|scaffold_409 (295050-295146) | |
| 528-696, gnl|bosTau2|chr25 (4712017-4711849) | |
| 528-696, gnl|canFam2|chr6 (39653047-39652859) | |
| 528-696, gnl|danRer3|chr3 (32635659-32635483) | |
| 528-696, gnl|dasNov1|scaffold_44315 (553-716) | |
| 528-696, gnl|echTel1|scaffold_278272 (40195-40378) | |
| 528-696, gnl|fr1|chrUn (247466880-247466698) | |
| 528-696, gnl|galGal2|chrUn (38931944-38931771) | |
| 528-696, gnl|hg17|chr16 (4802082-4802270) | |
| 528-696, gnl|Hg17|chr16 (4802254-4802086) | |
| 528-696, gnl|loxAfr1|scaffold_2336 (20252-20440) | |
| 528-696, gnl|mm7|chr16 (4692642-4692827) | |
| 528-696, gnl|Mm7|chr16 (4692814-4692646) | |
| 528-696, gnl|monDom2|scaffold_17 (42664865-42664677) | |
| 528-696, gnl|oryCun1|scaffold_149256 (5708-5870) | |
| 528-696, gnl|panTro1|chr18 (4752154-4752342) | |
| 528-696, gnl|rheMac2|chr20 (4980244-4980432) | |
| 528-696, gnl|rn3|chr10 (10676919-10676732) | |
| 528-696, gnl|tetNig1|chrUn_random (36591588-36591756) | |
| 528-696, gnl|xenTro1|scaffold_409 (298603-298424) |