Non-Coding RNA Search

Ss1.1-Pig3-SRG8006P21.5

Sequence:


               
               GTCCATATCACTGTGGCAAAGTACTCTTCCTGGGACTGTTGGCCTTTGGGGCCCTGGCAC
TGGGCCTCCGCGTGGCCGTCATTGAGACAGACCTGGAACAGCTCTGGGTGGAAGGTGAGT
GGTGGACACCGGCCGCAGCTGCTTTGGTATGCTGAGCACAAGACAAGAACAGGGTGAGGG
GCTGGGTATGAGTTCTGGTGGGCTTTGTTCTGGGTCTGGAGGGGCGCCTGCCTGCCATAG
CCTGGGCATCTGAGAGCACTGCTCCCTCCCTCCCACACCCATAAACGGGCATCTGCAGAT
GAGGGAGCCCTGTGAATAGTTGTCTGTGAGAGGGTGTGTTTATTGTTTATTGCCATTTTT
TTATGTGTATTTGACTGTGCTGCAGAGTTTGTAAAGGCAACTGAAACAAGACCCCATCTT
TCCGTAGCAAGGAAAGCATATGTACTGGGGAATAATATACAATATGACACAAAGCGGAAA
ATGATTGTGTTGGGAGTTCCCGCTGTGGCACAACAGGATCAGTGGCATCTTGGGAGCACT
GGGACGCAAGTTCAATCCCCAGCCCATGACAGAGGCTTAAGGATCCAGCGTTGCCACAGC
TTTGGCTTAAGTCAAAACTGCGGCTTGGATCTGATCCTGACCCATGAACTCCATATGCCA
TGGGGTGTCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCATATCACTGTGGCAAAGTACTCTTCCTGGGACTGTTGGCCTTTGGGGCCCTGGCAC
TGGGCCTCCGCGTGGCCGTCATTGAGACAGACCTGGAACAGCTCTGGGTGGAAGGTGAGT
GGTGGACACCGGCCGCAGCTGCTTTGGTATGCTGAGCACAAGACAAGAACAGGGTGAGGG
GCTGGGTATGAGTTCTGGTGGGCTTTGTTCTGGGTCTGGAGGGGCGCCTGCCTGCCATAG
CCTGGGCATCTGAGAGCACTGCTCCCTCCCTCCCACACCCATAAACGGGCATCTGCAGAT
GAGGGAGCCCTGTGAATAGTTGTCTGTGAGAGGGTGTGTTTATTGTTTATTGCCATTTTT
TTATGTGTATTTGACTGTGCTGCAGAGTTTGTAAAGGCAACTGAAACAAGACCCCATCTT
TCCGTAGCAAGGAAAGCATATGTACTGGGGAATAATATACAATATGACACAAAGCGGAAA
ATGATTGTGTTGGGAGTTCCCGCTGTGGCACAACAGGATCAGTGGCATCTTGGGAGCACT
GGGACGCAAGTTCAATCCCCAGCCCATGACAGAGGCTTAAGGATCCAGCGTTGCCACAGC
TTTGGCTTAAGTCAAAACTGCGGCTTGGATCTGATCCTGACCCATGAACTCCATATGCCA
TGGGGTGTCCAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               169-280, + strand, RNAz p=0.697407

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               169-280, + strand, RNAz p=0.697407

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               9-490, gnl|bosTau2|chr3 (68191064-68190575)
               

               
               9-490, gnl|Hg17|chr1 (44976717-44976218)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-490, gnl|bosTau2|chr3 (68191064-68190575)
               

               
               9-490, gnl|Hg17|chr1 (44976717-44976218)

	9-490, gnl\|bosTau2\|chr3 (68191064-68190575)
	9-490, gnl\|Hg17\|chr1 (44976717-44976218)