Non-Coding RNA Search

Ss1.1-Pig3-SRG8008L08.3

Sequence:


               
               GAGCGGCCGCCCGGGCAGGTCAGGCCACTACTCCCAAGGCGACAGAAGAACCTGAGGATG
TCAGACCTGAAGCCCCATTGGATCAGGAACAGATAACTGCTGCTTATCCTGTAGAACACA
GTCAGTTAGAGGCTCATCCAAAAGCAGACTTCATCAGAGAATCAAGTGAGACAGAAGTTC
AAAAGTTTTTAAGCAGATCAGTGGAGGACATTAGACCTCACCATACTGACACAAATAATC
AGTCTGCTTGTTTTGATGTATCTGATCGAAAGACTATATCCACTCCTCAAGAAGAGCGAA
TTTCATCTGGAGAAACTCAGCCTGCCCGGAAAAGAAGTGTTTCCCATGGATCTAACCATA
CTCAAAAATCAGAGGAGCAGAGAAATGAACCATCTGCAAGCATTCCTAAAGTAACTGGCA
GGTGCCTTGATTCAAAAGAACCAGCAGAAAGGCCAGAGGAAAAACCAAAAAAAGAGGGCT
TTATACGATCTTCTGAAGGACCAAAACCTGAAAAACCATATAAGTCTAAATCAGAAACTC
GTTGGGGCCCAAGACCAGGCTCTAACAGAAGAGAAGAAGGTAATGATAGGCCCGTGAGAA
GATCAGGTCCTATTAAAAAACCTATACTTAGAGATATGAAAGAAGAACGAGAGCAAAGGA
AGGAGAAAGAAGGAGAAAAGGGAGAAAAGGTCACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCGGCCGCCCGGGCAGGTCAGGCCACTACTCCCAAGGCGACAGAAGAACCTGAGGATG
TCAGACCTGAAGCCCCATTGGATCAGGAACAGATAACTGCTGCTTATCCTGTAGAACACA
GTCAGTTAGAGGCTCATCCAAAAGCAGACTTCATCAGAGAATCAAGTGAGACAGAAGTTC
AAAAGTTTTTAAGCAGATCAGTGGAGGACATTAGACCTCACCATACTGACACAAATAATC
AGTCTGCTTGTTTTGATGTATCTGATCGAAAGACTATATCCACTCCTCAAGAAGAGCGAA
TTTCATCTGGAGAAACTCAGCCTGCCCGGAAAAGAAGTGTTTCCCATGGATCTAACCATA
CTCAAAAATCAGAGGAGCAGAGAAATGAACCATCTGCAAGCATTCCTAAAGTAACTGGCA
GGTGCCTTGATTCAAAAGAACCAGCAGAAAGGCCAGAGGAAAAACCAAAAAAAGAGGGCT
TTATACGATCTTCTGAAGGACCAAAACCTGAAAAACCATATAAGTCTAAATCAGAAACTC
GTTGGGGCCCAAGACCAGGCTCTAACAGAAGAGAAGAAGGTAATGATAGGCCCGTGAGAA
GATCAGGTCCTATTAAAAAACCTATACTTAGAGATATGAAAGAAGAACGAGAGCAAAGGA
AGGAGAAAGAAGGAGAAAAGGGAGAAAAGGTCACTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               182-301, - strand, RNAz p=0.920443
               

               
               462-661, + strand, RNAz p=0.798706

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               182-301, - strand, RNAz p=0.920443
               

               
               462-661, + strand, RNAz p=0.798706

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               63-696, gnl|bosTau2|chr16 (27306831-27307464)
               

               
               63-696, gnl|Hg17|chr1 (168240766-168241399)
               

               
               63-696, gnl|Mm7|chr1 (162667850-162667217)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               63-696, gnl|bosTau2|chr16 (27306831-27307464)
               

               
               63-696, gnl|Hg17|chr1 (168240766-168241399)
               

               
               63-696, gnl|Mm7|chr1 (162667850-162667217)

	182-301, - strand, RNAz p=0.920443
	462-661, + strand, RNAz p=0.798706

	63-696, gnl\|bosTau2\|chr16 (27306831-27307464)
	63-696, gnl\|Hg17\|chr1 (168240766-168241399)
	63-696, gnl\|Mm7\|chr1 (162667850-162667217)