Non-Coding RNA Search

Ss1.1-Pig3-SRG8009B08.5

Sequence:


               
               AAAAACCTGCCCTCTTACACACAAAGTGAGGAATGTAACGGCACAAATAACCTTCATTGC
TAAAGGAATATAGTAAATCCAGCTGTGTTAAATGATTTTTGATAGATGATCAAAAGATTC
TAACCCAGGTTTTCTCTCATGATTATTTAAATAATATATTCCCCTCCATTTGTTACTTCT
AGAATACCATACTTTTTATAACTTGCCCCTGAGATTTTCTTAGAAACCATGTCTGTCACT
TTAAGGCTGTTCTCACTCTGTGACAGAACTTCAAACTCCTAACAGCTGGAACCAGATGCA
GACATAATAACCAAAATGAATCTGGCCTATTCATTACAAACAGATCCAAGTTAAGGTGAA
CAGAATTAGTGAGATAGGATCTGTTCTTTTTTTGTTGTCTTTTTAGGGCCGCACCCAAGG
CATATGGAGGTTGCCAGGCTAGAGGTTGAATCAGAGCTACAACCGCTGGCCTACGCCACA
GCTCACAGCAATGCCGGATCCTTAACCTGCTGCTCCAGGTCAGGGATCAAACCTGGGTCC
TCATGGATAGTAGTCAGACTCGTTTCTACTGAGCCACAATGGGACTCCTCTGCCTTGTTC
TTGACGCTTCTAGTCCAATGAGGAACACCTAAAATCTGGAGATTGTCAGTTTTAGCACTT
AAGCCAGAAGAGTGACAGCAGGCATAGTGGGTTATTCAAAGAAAAAAAAGCTGTGTAACA
AAAATGAATGACCTTAACCATCTAATAAAATACTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAACCTGCCCTCTTACACACAAAGTGAGGAATGTAACGGCACAAATAACCTTCATTGC
TAAAGGAATATAGTAAATCCAGCTGTGTTAAATGATTTTTGATAGATGATCAAAAGATTC
TAACCCAGGTTTTCTCTCATGATTATTTAAATAATATATTCCCCTCCATTTGTTACTTCT
AGAATACCATACTTTTTATAACTTGCCCCTGAGATTTTCTTAGAAACCATGTCTGTCACT
TTAAGGCTGTTCTCACTCTGTGACAGAACTTCAAACTCCTAACAGCTGGAACCAGATGCA
GACATAATAACCAAAATGAATCTGGCCTATTCATTACAAACAGATCCAAGTTAAGGTGAA
CAGAATTAGTGAGATAGGATCTGTTCTTTTTTTGTTGTCTTTTTAGGGCCGCACCCAAGG
CATATGGAGGTTGCCAGGCTAGAGGTTGAATCAGAGCTACAACCGCTGGCCTACGCCACA
GCTCACAGCAATGCCGGATCCTTAACCTGCTGCTCCAGGTCAGGGATCAAACCTGGGTCC
TCATGGATAGTAGTCAGACTCGTTTCTACTGAGCCACAATGGGACTCCTCTGCCTTGTTC
TTGACGCTTCTAGTCCAATGAGGAACACCTAAAATCTGGAGATTGTCAGTTTTAGCACTT
AAGCCAGAAGAGTGACAGCAGGCATAGTGGGTTATTCAAAGAAAAAAAAGCTGTGTAACA
AAAATGAATGACCTTAACCATCTAATAAAATACTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               191-331, - strand, RNAz p=0.993967

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               191-331, - strand, RNAz p=0.993967

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               114-331, gnl|bosTau2|chr29 (22140978-22140764)
               

               
               114-331, gnl|canFam2|chr5 (11590969-11590690)
               

               
               114-331, gnl|dasNov1|scaffold_940 (11-252)
               

               
               114-331, gnl|hg17|chr11 (125276091-125276425)
               

               
               114-331, gnl|Hg17|chr11 (125276282-125276494)
               

               
               114-331, gnl|panTro1|chr9_random (7013780-7014075)
               

               
               114-331, gnl|rheMac2|chr14 (124046781-124047081)
               


               
               595-741, gnl|bosTau2|chr29 (22140721-22140580)
               

               
               595-741, gnl|Hg17|chr11 (125276544-125276687)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               114-331, gnl|bosTau2|chr29 (22140978-22140764)
               

               
               114-331, gnl|canFam2|chr5 (11590969-11590690)
               

               
               114-331, gnl|dasNov1|scaffold_940 (11-252)
               

               
               114-331, gnl|hg17|chr11 (125276091-125276425)
               

               
               114-331, gnl|Hg17|chr11 (125276282-125276494)
               

               
               114-331, gnl|panTro1|chr9_random (7013780-7014075)
               

               
               114-331, gnl|rheMac2|chr14 (124046781-124047081)
               


               
               595-741, gnl|bosTau2|chr29 (22140721-22140580)
               

               
               595-741, gnl|Hg17|chr11 (125276544-125276687)

	114-331, gnl\|bosTau2\|chr29 (22140978-22140764)
	114-331, gnl\|canFam2\|chr5 (11590969-11590690)
	114-331, gnl\|dasNov1\|scaffold_940 (11-252)
	114-331, gnl\|hg17\|chr11 (125276091-125276425)
	114-331, gnl\|Hg17\|chr11 (125276282-125276494)
	114-331, gnl\|panTro1\|chr9_random (7013780-7014075)
	114-331, gnl\|rheMac2\|chr14 (124046781-124047081)

	595-741, gnl\|bosTau2\|chr29 (22140721-22140580)
	595-741, gnl\|Hg17\|chr11 (125276544-125276687)