Non-Coding RNA Search

Ss1.1-Pig3-SRG8009C10.5

Sequence:


               
               CTTTCACTTGAGCCACACATCTCCCTGCTCTTCTGCCACTGAAGGGGCCCCAGGCACTCT
GCTCAGCCTTTCAAGTGGGAAACCCAGATTCCCTCCTTTTGCCTGATTTCTTCCTCTGAG
ATGTCTCTGTTTTCCCTCTGGTTGGGAAAGTGCCCACTTCTATATCTGTTTTCCTGCCTA
GGGTCCCTGGTTCCAGATATTTTCAGAAAGCACAAAGAAACTCATTTTCTCTATAGGATC
AGGGTGGAGTGAGGAATCTAACCATTCCCCTCCTCCAAAACCAGGGAGTCAGAGCAGGCA
GGCCTGTTGACCCTAAACCGCATTTAGAGGGCAGCTCTGGGGAGTGGACATCCTGAAGAG
ATGGTAAAGGTGGAACAAAACCCTAGAAATAAATAACGAGGCCAGTATGCCTTCGCTGGT
GGCCCACAGGGGAAGACTAGACCTCTGTGCCAAGCAGTACCCTGTTCAGCCCACCTCAAA
GCTGTGGGCTTCCGCTGGGTCTGCAGGTGTGCAGGCTGGGATGCCGAAAATTTCCACATG
AGCTCCTCTTTCCTACACTTTCTCGTGGTTAGGGAATGACAGGGTTGAGGAGGAGGGGTT
AATCTGTTGGGGTGGAGACGCTCAGCAAGAAGCAGCTCACCAGCTCTTGCTGAAATCGGG
TAGGTGCTGCCTTTGTGGCACAGGCCATAATAGTTCCATAGACCCCTCCCCAGCCCTGTG
ATTGTAACTAGTTATTTTGATCATTTCCCTGGCCGTTGTTGTTTGTGTATGTTTTCCTCC
CTCCCTCACACTTTTTTTTTTTTTTTTTTTTTTTTTTAGAATGGCCTGATTATTGGCTAT
CCCACTTTTCAGCCCAGGCACATTGCTGGCAATTCAATTTATTTACCTTTTTTTTTTTTT
TTTTTAAAGAAAGGAAAAAGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTCACTTGAGCCACACATCTCCCTGCTCTTCTGCCACTGAAGGGGCCCCAGGCACTCT
GCTCAGCCTTTCAAGTGGGAAACCCAGATTCCCTCCTTTTGCCTGATTTCTTCCTCTGAG
ATGTCTCTGTTTTCCCTCTGGTTGGGAAAGTGCCCACTTCTATATCTGTTTTCCTGCCTA
GGGTCCCTGGTTCCAGATATTTTCAGAAAGCACAAAGAAACTCATTTTCTCTATAGGATC
AGGGTGGAGTGAGGAATCTAACCATTCCCCTCCTCCAAAACCAGGGAGTCAGAGCAGGCA
GGCCTGTTGACCCTAAACCGCATTTAGAGGGCAGCTCTGGGGAGTGGACATCCTGAAGAG
ATGGTAAAGGTGGAACAAAACCCTAGAAATAAATAACGAGGCCAGTATGCCTTCGCTGGT
GGCCCACAGGGGAAGACTAGACCTCTGTGCCAAGCAGTACCCTGTTCAGCCCACCTCAAA
GCTGTGGGCTTCCGCTGGGTCTGCAGGTGTGCAGGCTGGGATGCCGAAAATTTCCACATG
AGCTCCTCTTTCCTACACTTTCTCGTGGTTAGGGAATGACAGGGTTGAGGAGGAGGGGTT
AATCTGTTGGGGTGGAGACGCTCAGCAAGAAGCAGCTCACCAGCTCTTGCTGAAATCGGG
TAGGTGCTGCCTTTGTGGCACAGGCCATAATAGTTCCATAGACCCCTCCCCAGCCCTGTG
ATTGTAACTAGTTATTTTGATCATTTCCCTGGCCGTTGTTGTTTGTGTATGTTTTCCTCC
CTCCCTCACACTTTTTTTTTTTTTTTTTTTTTTTTTTAGAATGGCCTGATTATTGGCTAT
CCCACTTTTCAGCCCAGGCACATTGCTGGCAATTCAATTTATTTACCTTTTTTTTTTTTT
TTTTTAAAGAAAGGAAAAAGAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               376-490, - strand, RNAz p=0.61057
               

               
               571-688, + strand, RNAz p=0.71298
               

               
               800-924, - strand, RNAz p=0.997806

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               376-490, - strand, RNAz p=0.61057
               

               
               571-688, + strand, RNAz p=0.71298
               

               
               800-924, - strand, RNAz p=0.997806

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC032637, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC032637, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-746, gnl|bosTau2|chr5 (33425676-33426422)
               

               
               1-746, gnl|Hg17|chr12 (54886399-54885675)
               

               
               1-746, gnl|Mm7|chr10 (127940024-127940749)
               


               
               800-924, gnl|bosTau2|chr5 (33426445-33426564)
               

               
               800-924, gnl|canFam2|chr10 (3496644-3496862)
               

               
               800-924, gnl|dasNov1|scaffold_115366 (4360-4523)
               

               
               800-924, gnl|echTel1|scaffold_157162 (5278-5080)
               

               
               800-924, gnl|hg17|chr12 (54885509-54885716)
               

               
               800-924, gnl|Hg17|chr12 (54885621-54885519)
               

               
               800-924, gnl|loxAfr1|scaffold_1805 (90758-90553)
               

               
               800-924, gnl|mm7|chr10 (127940913-127940704)
               

               
               800-924, gnl|Mm7|chr10 (127940780-127940897)
               

               
               800-924, gnl|monDom2|scaffold_10 (35517396-35517660)
               

               
               800-924, gnl|oryCun1|scaffold_197599 (579-826)
               

               
               800-924, gnl|panTro1|chr10 (56134910-56135120)
               

               
               800-924, gnl|rheMac2|chr11 (53263705-53263918)
               

               
               800-924, gnl|rn3|chr7 (1725883-1725673)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-746, gnl|bosTau2|chr5 (33425676-33426422)
               

               
               1-746, gnl|Hg17|chr12 (54886399-54885675)
               

               
               1-746, gnl|Mm7|chr10 (127940024-127940749)
               


               
               800-924, gnl|bosTau2|chr5 (33426445-33426564)
               

               
               800-924, gnl|canFam2|chr10 (3496644-3496862)
               

               
               800-924, gnl|dasNov1|scaffold_115366 (4360-4523)
               

               
               800-924, gnl|echTel1|scaffold_157162 (5278-5080)
               

               
               800-924, gnl|hg17|chr12 (54885509-54885716)
               

               
               800-924, gnl|Hg17|chr12 (54885621-54885519)
               

               
               800-924, gnl|loxAfr1|scaffold_1805 (90758-90553)
               

               
               800-924, gnl|mm7|chr10 (127940913-127940704)
               

               
               800-924, gnl|Mm7|chr10 (127940780-127940897)
               

               
               800-924, gnl|monDom2|scaffold_10 (35517396-35517660)
               

               
               800-924, gnl|oryCun1|scaffold_197599 (579-826)
               

               
               800-924, gnl|panTro1|chr10 (56134910-56135120)
               

               
               800-924, gnl|rheMac2|chr11 (53263705-53263918)
               

               
               800-924, gnl|rn3|chr7 (1725883-1725673)

	376-490, - strand, RNAz p=0.61057
	571-688, + strand, RNAz p=0.71298
	800-924, - strand, RNAz p=0.997806

	1-746, gnl\|bosTau2\|chr5 (33425676-33426422)
	1-746, gnl\|Hg17\|chr12 (54886399-54885675)
	1-746, gnl\|Mm7\|chr10 (127940024-127940749)

	800-924, gnl\|bosTau2\|chr5 (33426445-33426564)
	800-924, gnl\|canFam2\|chr10 (3496644-3496862)
	800-924, gnl\|dasNov1\|scaffold_115366 (4360-4523)
	800-924, gnl\|echTel1\|scaffold_157162 (5278-5080)
	800-924, gnl\|hg17\|chr12 (54885509-54885716)
	800-924, gnl\|Hg17\|chr12 (54885621-54885519)
	800-924, gnl\|loxAfr1\|scaffold_1805 (90758-90553)
	800-924, gnl\|mm7\|chr10 (127940913-127940704)
	800-924, gnl\|Mm7\|chr10 (127940780-127940897)
	800-924, gnl\|monDom2\|scaffold_10 (35517396-35517660)
	800-924, gnl\|oryCun1\|scaffold_197599 (579-826)
	800-924, gnl\|panTro1\|chr10 (56134910-56135120)
	800-924, gnl\|rheMac2\|chr11 (53263705-53263918)
	800-924, gnl\|rn3\|chr7 (1725883-1725673)