Non-Coding RNA Search

Ss1.1-Pig3-SRG8009E07.5

Sequence:


               
               AAGACAATATTGGGGAAAAGAATGTATGCATATGTGTGACTGAGTCACTTTGCTCTGCAG
CAGAAATTGGCACAGCTTGTGGATCACCTCTCTTTCAATAAAAAGGAAAACAAGGAAGAC
AGTAGGCCTGTCAGTGGGGGCGGGGATGTTAAGAGAAACAGTTGGGTTTTATTCGGCAAA
CATCGAGGAGCCGCTGAAAGTACTGGCGCAGTTGTTGACTCGACCAGAGCTGCACCTTAN
GACCTGTACTGTCATAGGTGTAAGGTCAGTTAGAAGACAGGGCAAGTGATTCGAAAGATT
TGCCTGGTGTTTCTCACACTGATGAGCCTTGAAATGGTTTCCTGCACGTTGCTGATAAAG
ATACTGCGAAAGAAGCAATCCGGGCTCAGGTCATCTTCAGAAGCCCTGGGATAAGTGAAT
GTTAGGGGGGTCTTTCCTGTAGGATCCCCCCAGCCCTGCCCCGGCATGTGGAAGTTCCCC
CAGCCAGGGATCAAACCGGTGCCACCGCAGTGATCCTTAACCCCCTAGGCCGCTGGGGAA
CTCCTATCCATCCTCTCTATACCGGTTTGGCTCTGTTAACCCCATCGACCTGGACTGAAC
AGGAAACGTAAAATACGCTGCTCTTTTGCCTTTTCAGGTCAGAACGAAGGAACCATCTCG
GTGGTGGAGCCCCAAACACTGTACGTGATCGAGGAGGACAAAGGCGACGGGTGGACCCGC
ATCCGCAGAAACGAGGATGAAGAGGGCTACGTCCCCACGTCATACGTCGAAGTCTATTTG
GACAAAAATGCCAAAGGTGCTAAGACTTATATTTAATACCCCTTAAAAAAAACTTTTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGACAATATTGGGGAAAAGAATGTATGCATATGTGTGACTGAGTCACTTTGCTCTGCAG
CAGAAATTGGCACAGCTTGTGGATCACCTCTCTTTCAATAAAAAGGAAAACAAGGAAGAC
AGTAGGCCTGTCAGTGGGGGCGGGGATGTTAAGAGAAACAGTTGGGTTTTATTCGGCAAA
CATCGAGGAGCCGCTGAAAGTACTGGCGCAGTTGTTGACTCGACCAGAGCTGCACCTTAN
GACCTGTACTGTCATAGGTGTAAGGTCAGTTAGAAGACAGGGCAAGTGATTCGAAAGATT
TGCCTGGTGTTTCTCACACTGATGAGCCTTGAAATGGTTTCCTGCACGTTGCTGATAAAG
ATACTGCGAAAGAAGCAATCCGGGCTCAGGTCATCTTCAGAAGCCCTGGGATAAGTGAAT
GTTAGGGGGGTCTTTCCTGTAGGATCCCCCCAGCCCTGCCCCGGCATGTGGAAGTTCCCC
CAGCCAGGGATCAAACCGGTGCCACCGCAGTGATCCTTAACCCCCTAGGCCGCTGGGGAA
CTCCTATCCATCCTCTCTATACCGGTTTGGCTCTGTTAACCCCATCGACCTGGACTGAAC
AGGAAACGTAAAATACGCTGCTCTTTTGCCTTTTCAGGTCAGAACGAAGGAACCATCTCG
GTGGTGGAGCCCCAAACACTGTACGTGATCGAGGAGGACAAAGGCGACGGGTGGACCCGC
ATCCGCAGAAACGAGGATGAAGAGGGCTACGTCCCCACGTCATACGTCGAAGTCTATTTG
GACAAAAATGCCAAAGGTGCTAAGACTTATATTTAATACCCCTTAAAAAAAACTTTTGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               715-833, - strand, RNAz p=0.505889

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               715-833, - strand, RNAz p=0.505889

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               144-419, gnl|bosTau2|chr11 (80495697-80495408)
               


               
               588-833, gnl|bosTau2|chr11 (80494492-80494249)
               

               
               588-833, gnl|Hg17|chr9 (129737877-129737634)
               

               
               588-833, gnl|Mm7|chr2 (31040563-31040306)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               144-419, gnl|bosTau2|chr11 (80495697-80495408)
               


               
               588-833, gnl|bosTau2|chr11 (80494492-80494249)
               

               
               588-833, gnl|Hg17|chr9 (129737877-129737634)
               

               
               588-833, gnl|Mm7|chr2 (31040563-31040306)

	144-419, gnl\|bosTau2\|chr11 (80495697-80495408)

	588-833, gnl\|bosTau2\|chr11 (80494492-80494249)
	588-833, gnl\|Hg17\|chr9 (129737877-129737634)
	588-833, gnl\|Mm7\|chr2 (31040563-31040306)