Non-Coding RNA Search

Ss1.1-Pig3-SRG8009E19.5

Sequence:


               
               CAACGTGGGAATGTGTTGACTGCTGGTGCCGATATAATGCTGATCCCAGCCGAGCAGAGT
AAGGACAGAGAAAATGGGGCAAAGGAAAGCTGGGTGAATAACATCAACAAAGACGCCTTC
CCGTCCCCAGAGCTGAGCGGCGTTGTGCAAGAGCCCGGAGAAGACGTAGCCCCCGCAAGC
CCCAGTTCCAGTGCGGTAAATCCAGCTTCCACCGTGATTGATACATCCGAGGAAAACACA
AGGAAGTCAGATGCGTCTCCAGCCAAGCAAAGGAAGAATCCGTTTAATAGCTCCATGTTG
CCGGAAGATCACTTATCTCAACAAACCAAAAACGAGCAGTCACACAATGGAAGGGCTGGT
TTCTTTCAGACTTCAGAAAAGGAGTCCAAAGAAAAATCATCTCGCCCGGATATTTCAAGT
CAAAAGTTAGAGAAACCAGAGCCGACTCTGCCAGGCCCTGAGAAAGGGTCCCAAATCAAG
CCTCCAATCCCCAAAGCCAGGAGAATGATGTACAAATCACCTGACCTAAAGCAAGATGAT
AAGCAGTCCCTTCCTAGACAAAGGACAGACTCCCTGAACACAAGAAGGCCTCCGCGAGGG
ATCCTGAAACGCAACTCCAGTTCCAGCAGCACAGACTCAGAAACTGTTCGTTTCCATCAG
AGCTTTGAACCCAAAAGCAAAATCGTGTCCCCTGGCCTAACCATCCATGAGAGGATTTCT
GAGAAGGAGTGTTCTTTAGAGGATGACTCCTCCTCAAACTCGCTGGAGCCGTTAAAGCAC
GTGAGATTCTCTGCGCTGGAAGATGGACACCCACAGAGTCCAGAGCTAGTCCGTGGCCGT
GAGGTGGGAGAATTTGGTGTTTTAGAATCTGACTCGTTGAAGAATGGAACAGAAGATGCT
GGGGACGCAGATGAGTTTTGGAAGGACCCTAAGCCCTCGCAGGACAGAAAGCCTTTGCCT
TTTCAGCCCCCAGCCTCAAGCCCAAGTGCATCAAAAAGTGACACACATCAGCCAACAACT
TCTGGTTCTTTTCCAGTTAATGAGCACCATTCTCCCAAAGAAGTTCTCACTGCAAGACCA
CAGTCCACTGAGAATCCACACACCCTTGGTGAACACAAAGCTAACTCATCAGAATTGTTA
AAGCTTGAGTCAACATTGTCCCAAAACCCTGCTGATGAACTGTCTCACACTGAGCCTGAG
CCTTCTCAGGTGCCAGATCACAGTTCTAGAGACCATCAGCAAGGTAAGCCCCCTCTTCTC
AAGGCCCTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACGTGGGAATGTGTTGACTGCTGGTGCCGATATAATGCTGATCCCAGCCGAGCAGAGT
AAGGACAGAGAAAATGGGGCAAAGGAAAGCTGGGTGAATAACATCAACAAAGACGCCTTC
CCGTCCCCAGAGCTGAGCGGCGTTGTGCAAGAGCCCGGAGAAGACGTAGCCCCCGCAAGC
CCCAGTTCCAGTGCGGTAAATCCAGCTTCCACCGTGATTGATACATCCGAGGAAAACACA
AGGAAGTCAGATGCGTCTCCAGCCAAGCAAAGGAAGAATCCGTTTAATAGCTCCATGTTG
CCGGAAGATCACTTATCTCAACAAACCAAAAACGAGCAGTCACACAATGGAAGGGCTGGT
TTCTTTCAGACTTCAGAAAAGGAGTCCAAAGAAAAATCATCTCGCCCGGATATTTCAAGT
CAAAAGTTAGAGAAACCAGAGCCGACTCTGCCAGGCCCTGAGAAAGGGTCCCAAATCAAG
CCTCCAATCCCCAAAGCCAGGAGAATGATGTACAAATCACCTGACCTAAAGCAAGATGAT
AAGCAGTCCCTTCCTAGACAAAGGACAGACTCCCTGAACACAAGAAGGCCTCCGCGAGGG
ATCCTGAAACGCAACTCCAGTTCCAGCAGCACAGACTCAGAAACTGTTCGTTTCCATCAG
AGCTTTGAACCCAAAAGCAAAATCGTGTCCCCTGGCCTAACCATCCATGAGAGGATTTCT
GAGAAGGAGTGTTCTTTAGAGGATGACTCCTCCTCAAACTCGCTGGAGCCGTTAAAGCAC
GTGAGATTCTCTGCGCTGGAAGATGGACACCCACAGAGTCCAGAGCTAGTCCGTGGCCGT
GAGGTGGGAGAATTTGGTGTTTTAGAATCTGACTCGTTGAAGAATGGAACAGAAGATGCT
GGGGACGCAGATGAGTTTTGGAAGGACCCTAAGCCCTCGCAGGACAGAAAGCCTTTGCCT
TTTCAGCCCCCAGCCTCAAGCCCAAGTGCATCAAAAAGTGACACACATCAGCCAACAACT
TCTGGTTCTTTTCCAGTTAATGAGCACCATTCTCCCAAAGAAGTTCTCACTGCAAGACCA
CAGTCCACTGAGAATCCACACACCCTTGGTGAACACAAAGCTAACTCATCAGAATTGTTA
AAGCTTGAGTCAACATTGTCCCAAAACCCTGCTGATGAACTGTCTCACACTGAGCCTGAG
CCTTCTCAGGTGCCAGATCACAGTTCTAGAGACCATCAGCAAGGTAAGCCCCCTCTTCTC
AAGGCCCTAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               698-817, - strand, RNAz p=0.543481

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               698-817, - strand, RNAz p=0.543481

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               767-894, + strand, RNAmicro p=0.977699

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               767-894, + strand, RNAmicro p=0.977699

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               382-1138, gnl|bosTau2|chr29 (4421361-4420605)
               

               
               382-1138, gnl|Hg17|chr11 (85123422-85122645)
               

               
               382-1138, gnl|Mm7|chr7 (86382286-86383063)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               382-1138, gnl|bosTau2|chr29 (4421361-4420605)
               

               
               382-1138, gnl|Hg17|chr11 (85123422-85122645)
               

               
               382-1138, gnl|Mm7|chr7 (86382286-86383063)

	382-1138, gnl\|bosTau2\|chr29 (4421361-4420605)
	382-1138, gnl\|Hg17\|chr11 (85123422-85122645)
	382-1138, gnl\|Mm7\|chr7 (86382286-86383063)