Ss1.1-Pig3-SRG8009F03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCGCTGCAGTAGTTCTCGGGGCGGCCGGCCTGGCCTTATCTCTTTGCCGCCTCGTGGCC CTCACCATCTTGACAATAGCAGCCCTGGCCCAGGTTCTGAGGCACGCGGTATCAATGGAG GCCCTTCCCGCATGTCCCCTAAGGCCCAGCGACCTCTGAGAGGTGCCAAGACTCTGTCTT CCCCCAGCAGCAGGCCTTCTGGAGAAGCCTCTGTTCCACCTCCTCCTGCAGTGGGCCGGA TGTACCCGCCGCGCTCTCCCAAATCAGCTGCCCCCGCCCCAATCTCAGCTTCCTGTCCTG AGCCTCCCATGGGCTCAGCAGTACCAACCTCTTCAGCTTCCATCCCAGTGACATCAGCAG TTGGGGATCCTGGAGTAGGCTCCGTTTCCCCAGCTTCTCCAAAGATCTCACTGGCCCCCA CAGATGTAAAAGAACTCCCGGCCAAGGAACCTGGAAGGACGCTGGAGTCTCAGGAGTTGT CCCGGATTGCAGCGAAAGTCCCTGGCCTTCAGAATGAACAGAAGCGTTTTCAGCTGGAAG AACTGAGAAAGTTTGGGGCCCAGTTTAAGCTTCAGCCCAGTAGCTCCCCTGAGACCAGCT TGGATCCTTTTCCTCCACGGATCCTGAAAGAGGAGGCCAAAGGGAAGGAGAAGGAGGTGG ATGGTCTTTTGGCTTCAGAGCCCCTGGGGTCTCCTGTTTCCTCGAAGGCCGAATCAGTAT CGGACAAGGAGGACAAACTGCCCCTGCCAGCAGCAGGGGGTGCCGAGGGGCCGGAGCAGC CTCCGGCACCTTGCCCAAGCCAAACTGGCAGCCCCCCAGTGGGCCTCATCAAGGGAGATG ACAAGGATGAGGGCCCAGTTGCTGAACAAGTAAAGAAGTCAACATTGAACCCCAATGCCA AGGAGTTCAATCCCACTAAGCCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCGCTGCAGTAGTTCTCGGGGCGGCCGGCCTGGCCTTATCTCTTTGCCGCCTCGTGGCC CTCACCATCTTGACAATAGCAGCCCTGGCCCAGGTTCTGAGGCACGCGGTATCAATGGAG GCCCTTCCCGCATGTCCCCTAAGGCCCAGCGACCTCTGAGAGGTGCCAAGACTCTGTCTT CCCCCAGCAGCAGGCCTTCTGGAGAAGCCTCTGTTCCACCTCCTCCTGCAGTGGGCCGGA TGTACCCGCCGCGCTCTCCCAAATCAGCTGCCCCCGCCCCAATCTCAGCTTCCTGTCCTG AGCCTCCCATGGGCTCAGCAGTACCAACCTCTTCAGCTTCCATCCCAGTGACATCAGCAG TTGGGGATCCTGGAGTAGGCTCCGTTTCCCCAGCTTCTCCAAAGATCTCACTGGCCCCCA CAGATGTAAAAGAACTCCCGGCCAAGGAACCTGGAAGGACGCTGGAGTCTCAGGAGTTGT CCCGGATTGCAGCGAAAGTCCCTGGCCTTCAGAATGAACAGAAGCGTTTTCAGCTGGAAG AACTGAGAAAGTTTGGGGCCCAGTTTAAGCTTCAGCCCAGTAGCTCCCCTGAGACCAGCT TGGATCCTTTTCCTCCACGGATCCTGAAAGAGGAGGCCAAAGGGAAGGAGAAGGAGGTGG ATGGTCTTTTGGCTTCAGAGCCCCTGGGGTCTCCTGTTTCCTCGAAGGCCGAATCAGTAT CGGACAAGGAGGACAAACTGCCCCTGCCAGCAGCAGGGGGTGCCGAGGGGCCGGAGCAGC CTCCGGCACCTTGCCCAAGCCAAACTGGCAGCCCCCCAGTGGGCCTCATCAAGGGAGATG ACAAGGATGAGGGCCCAGTTGCTGAACAAGTAAAGAAGTCAACATTGAACCCCAATGCCA AGGAGTTCAATCCCACTAAGCCCC |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 268-432, - strand, RNAz p=0.84442 | |
| 288-400, + strand, RNAz p=0.665283 | |
| 687-865, - strand, RNAz p=0.996554 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 268-432, - strand, RNAz p=0.84442 | |
| 288-400, + strand, RNAz p=0.665283 | |
| 687-865, - strand, RNAz p=0.996554 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 743-808, - strand, RNAmicro p=0.911076 |
| Similar Transcript(s): 6 entry(ies) | More info |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
| 687-865, LB01712.CR_O14 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|DV814287.1|), blast E-value=0, identity=100% | |
| 687-865, LB0261.CR_G04 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV878262.1|), blast E-value=0, identity=100% | |
| 687-865, LB0281.CR_P08 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV907175.1|), blast E-value=0, identity=100% | |
| 687-865, LB01632.CR_D06 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|EE333100.1|), blast E-value=0, identity=100% | |
| 687-865, LB02537.CR_E11 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE341612.1|), blast E-value=0, identity=100% | |
| 687-865, LB03087.CR_C13 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE387657.1|), blast E-value=0, identity=100% |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 687-865, LB01712.CR_O14 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|DV814287.1|), blast E-value=0, identity=100% | |
| 687-865, LB0261.CR_G04 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV878262.1|), blast E-value=0, identity=100% | |
| 687-865, LB0281.CR_P08 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV907175.1|), blast E-value=0, identity=100% | |
| 687-865, LB01632.CR_D06 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|EE333100.1|), blast E-value=0, identity=100% | |
| 687-865, LB02537.CR_E11 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE341612.1|), blast E-value=0, identity=100% | |
| 687-865, LB03087.CR_C13 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE387657.1|), blast E-value=0, identity=100% |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 1-121, gnl|bosTau2|chr25 (24929184-24929064) | |
| 1-121, gnl|canFam2|chr6 (21361099-21361259) | |
| 1-121, gnl|canFam2|chr6 (21361242-21361100) | |
| 1-121, gnl|dasNov1|scaffold_11228 (44415-44571) | |
| 1-121, gnl|dasNov1|scaffold_11228 (44558-44416) | |
| 1-121, gnl|echTel1|scaffold_306327 (3696-3540) | |
| 1-121, gnl|echTel1|scaffold_306327 (3553-3695) | |
| 1-121, gnl|fr1|chrUn (46383960-46384109) | |
| 1-121, gnl|hg17|chr16 (28749468-28749624) | |
| 1-121, gnl|Hg17|chr16 (28749493-28749613) | |
| 1-121, gnl|hg17|chr7 (16398475-16398617) | |
| 1-121, gnl|loxAfr1|scaffold_48966 (5179-5023) | |
| 1-121, gnl|loxAfr1|scaffold_48966 (5036-5178) | |
| 1-121, gnl|mm7|chr7 (122594197-122594043) | |
| 1-121, gnl|mm7|chr7 (122594054-122594196) | |
| 1-121, gnl|Mm7|chr7 (122594170-122594050) | |
| 1-121, gnl|monDom2|scaffold_5 (119435938-119435776) | |
| 1-121, gnl|monDom2|scaffold_5 (119435789-119435937) | |
| 1-121, gnl|panTro1|chr18 (29466029-29466185) | |
| 1-121, gnl|panTro1|chr6 (17282956-17283098) | |
| 1-121, gnl|rheMac2|chr20 (27019709-27019553) | |
| 1-121, gnl|rheMac2|chr3 (109528110-109527968) | |
| 1-121, gnl|rn3|chr1 (185791527-185791371) | |
| 1-121, gnl|rn3|chr1 (185791384-185791526) | |
| 1-121, gnl|xenTro1|scaffold_592 (449298-449139) | |
| 1-121, gnl|xenTro1|scaffold_592 (449152-449297) | |
| 229-432, gnl|bosTau2|chr25 (24928256-24928052) | |
| 229-432, gnl|canFam2|chr6 (21362614-21362860) | |
| 229-432, gnl|dasNov1|scaffold_11228 (45411-45653) | |
| 229-432, gnl|echTel1|scaffold_306327 (2678-2436) | |
| 229-432, gnl|hg17|chr16 (28751006-28751248) | |
| 229-432, gnl|Hg17|chr16 (28751024-28751228) | |
| 229-432, gnl|loxAfr1|scaffold_48966 (3958-3716) | |
| 229-432, gnl|mm7|chr7 (122593209-122592964) | |
| 229-432, gnl|Mm7|chr7 (122593189-122592988) | |
| 229-432, gnl|monDom2|scaffold_5 (119435259-119435016) | |
| 229-432, gnl|oryCun1|scaffold_214919 (94148-93907) | |
| 229-432, gnl|panTro1|chr18 (29467563-29467805) | |
| 229-432, gnl|rheMac2|chr20 (27018166-27017924) | |
| 229-432, gnl|rn3|chr1 (185790465-185790220) | |
| 229-432, gnl|xenTro1|scaffold_592 (448785-448574) | |
| 568-865, gnl|bosTau2|chr25 (24927407-24927110) | |
| 568-865, gnl|Hg17|chr16 (28751879-28752176) | |
| 568-865, gnl|Mm7|chr7 (122592215-122591918) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-121, gnl|bosTau2|chr25 (24929184-24929064) | |
| 1-121, gnl|canFam2|chr6 (21361099-21361259) | |
| 1-121, gnl|canFam2|chr6 (21361242-21361100) | |
| 1-121, gnl|dasNov1|scaffold_11228 (44415-44571) | |
| 1-121, gnl|dasNov1|scaffold_11228 (44558-44416) | |
| 1-121, gnl|echTel1|scaffold_306327 (3696-3540) | |
| 1-121, gnl|echTel1|scaffold_306327 (3553-3695) | |
| 1-121, gnl|fr1|chrUn (46383960-46384109) | |
| 1-121, gnl|hg17|chr16 (28749468-28749624) | |
| 1-121, gnl|Hg17|chr16 (28749493-28749613) | |
| 1-121, gnl|hg17|chr7 (16398475-16398617) | |
| 1-121, gnl|loxAfr1|scaffold_48966 (5179-5023) | |
| 1-121, gnl|loxAfr1|scaffold_48966 (5036-5178) | |
| 1-121, gnl|mm7|chr7 (122594197-122594043) | |
| 1-121, gnl|mm7|chr7 (122594054-122594196) | |
| 1-121, gnl|Mm7|chr7 (122594170-122594050) | |
| 1-121, gnl|monDom2|scaffold_5 (119435938-119435776) | |
| 1-121, gnl|monDom2|scaffold_5 (119435789-119435937) | |
| 1-121, gnl|panTro1|chr18 (29466029-29466185) | |
| 1-121, gnl|panTro1|chr6 (17282956-17283098) | |
| 1-121, gnl|rheMac2|chr20 (27019709-27019553) | |
| 1-121, gnl|rheMac2|chr3 (109528110-109527968) | |
| 1-121, gnl|rn3|chr1 (185791527-185791371) | |
| 1-121, gnl|rn3|chr1 (185791384-185791526) | |
| 1-121, gnl|xenTro1|scaffold_592 (449298-449139) | |
| 1-121, gnl|xenTro1|scaffold_592 (449152-449297) | |
| 229-432, gnl|bosTau2|chr25 (24928256-24928052) | |
| 229-432, gnl|canFam2|chr6 (21362614-21362860) | |
| 229-432, gnl|dasNov1|scaffold_11228 (45411-45653) | |
| 229-432, gnl|echTel1|scaffold_306327 (2678-2436) | |
| 229-432, gnl|hg17|chr16 (28751006-28751248) | |
| 229-432, gnl|Hg17|chr16 (28751024-28751228) | |
| 229-432, gnl|loxAfr1|scaffold_48966 (3958-3716) | |
| 229-432, gnl|mm7|chr7 (122593209-122592964) | |
| 229-432, gnl|Mm7|chr7 (122593189-122592988) | |
| 229-432, gnl|monDom2|scaffold_5 (119435259-119435016) | |
| 229-432, gnl|oryCun1|scaffold_214919 (94148-93907) | |
| 229-432, gnl|panTro1|chr18 (29467563-29467805) | |
| 229-432, gnl|rheMac2|chr20 (27018166-27017924) | |
| 229-432, gnl|rn3|chr1 (185790465-185790220) | |
| 229-432, gnl|xenTro1|scaffold_592 (448785-448574) | |
| 568-865, gnl|bosTau2|chr25 (24927407-24927110) | |
| 568-865, gnl|Hg17|chr16 (28751879-28752176) | |
| 568-865, gnl|Mm7|chr7 (122592215-122591918) |