Non-Coding RNA Search

Ss1.1-Pig3-SRG8009F07.5

Sequence:


               
               GAGACATCTGCCAGAAGCCTAGGCTGGAGGACCAACTTCCTTGCCATAGCTTCCATGCTC
TGAGGAGGCCCTCATAAGTCATCTCTGAAGGACAGAGGTGCAGCCCTGGGTCAGGAGTCT
GGCTACTTGACTTGATCCCGGTAAGGACCATGCTCCTGTTTTCATCACTTCCTGTCCTGG
GTGTGTGTGTGGTGACAGCATCCTACTCANAAATAAAAACCTGTGAGGATGCTCAGAAGA
CCTGCTCAGTGATTACCTGTGGCATCCCGGTCACCAATGGCACCCCAGGCAGAGATGGGC
GAGATGGACCCAAAGGAGAAAAGGGAGAACCAGGGCCAGGGTTCAGAGGCTCACAGGGCC
CTCCAGGGAAAATGGGACCTCCAGGAAATATTGGGGAGACTGGGCCTCTGGGACCAAAGG
GCCAGAAAGGAGACCCTGGAGACACTTCAGGTGTTGAGGCTAAGCTGGCAAACTTAGAGG
GACAGATAAGGATCCTGAAATCAGAACTGGATCATGTCAAAAAGTTGCAAACCTTCTCCT
TGGGCAAAAAGTCTAGGAAGAAGCTCTATGTGACCAATGGTGAAATGATGCCTTTTTCCA
AAGTGAAGACTCTGTGTGCTGAGCTTCAGGCCACCGTGGCCACCCCTAAGAATGCTGAGG
AGAACAAAGCCATCCAGGACATGGCCCCCGACGTTGCCTTCCTGGGCATCACAGATGAGG
TGACCGAAGGCCAGTTTATGTATGTAACGGGAGGAAGGATGACCTACAGCAACTGGAAGA
GTAATGAGCCGAATGACCATGGTTCAGGGGCGCCCTGCGTGATCCTCCAAAGAGACGGGC
TCTGGAATGACATCTCTTGCTCTTCCTCCTTTTTGGCAGTCTGTGAATTCCCAGCCTGAG
GAGGCAGGCGCAGGTTTCTCCACCCGCTCCTTGGCTCCCTGCTGAGCTCTTTGCTGCTCT
GAAAGAGAATCCAGTGTCACCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGACATCTGCCAGAAGCCTAGGCTGGAGGACCAACTTCCTTGCCATAGCTTCCATGCTC
TGAGGAGGCCCTCATAAGTCATCTCTGAAGGACAGAGGTGCAGCCCTGGGTCAGGAGTCT
GGCTACTTGACTTGATCCCGGTAAGGACCATGCTCCTGTTTTCATCACTTCCTGTCCTGG
GTGTGTGTGTGGTGACAGCATCCTACTCANAAATAAAAACCTGTGAGGATGCTCAGAAGA
CCTGCTCAGTGATTACCTGTGGCATCCCGGTCACCAATGGCACCCCAGGCAGAGATGGGC
GAGATGGACCCAAAGGAGAAAAGGGAGAACCAGGGCCAGGGTTCAGAGGCTCACAGGGCC
CTCCAGGGAAAATGGGACCTCCAGGAAATATTGGGGAGACTGGGCCTCTGGGACCAAAGG
GCCAGAAAGGAGACCCTGGAGACACTTCAGGTGTTGAGGCTAAGCTGGCAAACTTAGAGG
GACAGATAAGGATCCTGAAATCAGAACTGGATCATGTCAAAAAGTTGCAAACCTTCTCCT
TGGGCAAAAAGTCTAGGAAGAAGCTCTATGTGACCAATGGTGAAATGATGCCTTTTTCCA
AAGTGAAGACTCTGTGTGCTGAGCTTCAGGCCACCGTGGCCACCCCTAAGAATGCTGAGG
AGAACAAAGCCATCCAGGACATGGCCCCCGACGTTGCCTTCCTGGGCATCACAGATGAGG
TGACCGAAGGCCAGTTTATGTATGTAACGGGAGGAAGGATGACCTACAGCAACTGGAAGA
GTAATGAGCCGAATGACCATGGTTCAGGGGCGCCCTGCGTGATCCTCCAAAGAGACGGGC
TCTGGAATGACATCTCTTGCTCTTCCTCCTTTTTGGCAGTCTGTGAATTCCCAGCCTGAG
GAGGCAGGCGCAGGTTTCTCCACCCGCTCCTTGGCTCCCTGCTGAGCTCTTTGCTGCTCT
GAAAGAGAATCCAGTGTCACCAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5U9S1_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5U9S1_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               606-725, - strand, RNAz p=0.638146

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               606-725, - strand, RNAz p=0.638146

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               140-339, gnl|bosTau2|chr26 (4863999-4864204)
               

               
               140-339, gnl|Hg17|chr10 (54201411-54201209)
               

               
               140-339, gnl|Mm7|chr19 (29933116-29933306)
               


               
               526-944, gnl|bosTau2|chr28 (28010868-28011280)
               

               
               526-944, gnl|Hg17|chr10 (81012427-81012015)
               

               
               526-944, gnl|Mm7|chr14 (38584968-38585392)
               


               
               527-901, gnl|bosTau2|chr26 (4867119-4867493)
               

               
               527-901, gnl|Hg17|chr10 (54198275-54197901)
               

               
               527-901, gnl|Mm7|chr19 (29938297-29938671)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               140-339, gnl|bosTau2|chr26 (4863999-4864204)
               

               
               140-339, gnl|Hg17|chr10 (54201411-54201209)
               

               
               140-339, gnl|Mm7|chr19 (29933116-29933306)
               


               
               526-944, gnl|bosTau2|chr28 (28010868-28011280)
               

               
               526-944, gnl|Hg17|chr10 (81012427-81012015)
               

               
               526-944, gnl|Mm7|chr14 (38584968-38585392)
               


               
               527-901, gnl|bosTau2|chr26 (4867119-4867493)
               

               
               527-901, gnl|Hg17|chr10 (54198275-54197901)
               

               
               527-901, gnl|Mm7|chr19 (29938297-29938671)

	140-339, gnl\|bosTau2\|chr26 (4863999-4864204)
	140-339, gnl\|Hg17\|chr10 (54201411-54201209)
	140-339, gnl\|Mm7\|chr19 (29933116-29933306)

	526-944, gnl\|bosTau2\|chr28 (28010868-28011280)
	526-944, gnl\|Hg17\|chr10 (81012427-81012015)
	526-944, gnl\|Mm7\|chr14 (38584968-38585392)

	527-901, gnl\|bosTau2\|chr26 (4867119-4867493)
	527-901, gnl\|Hg17\|chr10 (54198275-54197901)
	527-901, gnl\|Mm7\|chr19 (29938297-29938671)