Non-Coding RNA Search

Ss1.1-Pig3-SRG8009H02.3

Sequence:


               
               GACAGGGTCCAGCCAGGCCCAGCCTGGTGAAACCCAGTCTGGGTGTGAGGGTGGTCTATG
GAGTGAGTGAGGAGGTAAGGGGCCGGTCCAAGCGGTTACTATTATGTCTGGCAGGCGGGA
GCTGTAGGCAGACAAAATTGACCCTCACTTTATTTTCCAGGTGGCAGTGCTCCCCTTTGG
ACTTTTCCTCTAGGTTCTGCGCTAACCTGTTCTGCGAGCTCACTCTGCCCACCCCCCACT
CCCCCTCCTCCCCTTCACTCTCTCGAGGTTACCCATTCACTTAAAACATTGCTTCTGGTA
ATCTGGTAAGACGGGAAAGTTGTTGCCATTGGAGTCGGTATCTTGGTAACCGTCGAGAGG
AGAGGCATCCCCTGCTGATACTCTGGGTGGGCGGGGTGGTGTTGCTTGCCAGTGGAGAGG
GTGGGGATTGAATGTGCACCCTTGGGTGGGCCCGCAGCGACGGTACCATCTAAAAGCTAC
GAAAATGCCTCATAGACGGTGGTTTGTTACTGTAGTGTTCATCATGGCGATCTGATGGCA
CCAGGAGAAATGGAGCCCCTGGCCAGTGTGAGTCGTAGCGGCGCAGGAGGGGAGACCCTG
GAGGAAAGAGCCCGCCTAAATTGCTGTCTGCAGAGTGAATTTCCAGAGGCTTAGGAGGAG
GAAGTTCTCCAGTGGCATGTTTCCAGGCCTTGCTCAGGAAGCCCTGTATTCAGGAGGCCA
TCTTTAAGGTTTTCATGAGCTTATGAGGGGCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAGGGTCCAGCCAGGCCCAGCCTGGTGAAACCCAGTCTGGGTGTGAGGGTGGTCTATG
GAGTGAGTGAGGAGGTAAGGGGCCGGTCCAAGCGGTTACTATTATGTCTGGCAGGCGGGA
GCTGTAGGCAGACAAAATTGACCCTCACTTTATTTTCCAGGTGGCAGTGCTCCCCTTTGG
ACTTTTCCTCTAGGTTCTGCGCTAACCTGTTCTGCGAGCTCACTCTGCCCACCCCCCACT
CCCCCTCCTCCCCTTCACTCTCTCGAGGTTACCCATTCACTTAAAACATTGCTTCTGGTA
ATCTGGTAAGACGGGAAAGTTGTTGCCATTGGAGTCGGTATCTTGGTAACCGTCGAGAGG
AGAGGCATCCCCTGCTGATACTCTGGGTGGGCGGGGTGGTGTTGCTTGCCAGTGGAGAGG
GTGGGGATTGAATGTGCACCCTTGGGTGGGCCCGCAGCGACGGTACCATCTAAAAGCTAC
GAAAATGCCTCATAGACGGTGGTTTGTTACTGTAGTGTTCATCATGGCGATCTGATGGCA
CCAGGAGAAATGGAGCCCCTGGCCAGTGTGAGTCGTAGCGGCGCAGGAGGGGAGACCCTG
GAGGAAAGAGCCCGCCTAAATTGCTGTCTGCAGAGTGAATTTCCAGAGGCTTAGGAGGAG
GAAGTTCTCCAGTGGCATGTTTCCAGGCCTTGCTCAGGAAGCCCTGTATTCAGGAGGCCA
TCTTTAAGGTTTTCATGAGCTTATGAGGGGCAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1478282|gb|AAB05597.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1478282|gb|AAB05597.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-90, + strand, RNAz p=0.806762
               

               
               140-258, - strand, RNAz p=0.571288
               

               
               609-727, - strand, RNAz p=0.768242

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-90, + strand, RNAz p=0.806762
               

               
               140-258, - strand, RNAz p=0.571288
               

               
               609-727, - strand, RNAz p=0.768242

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-752, gnl|bosTau2|chr29 (38492715-38491962)
               

               
               1-752, gnl|Hg17|chr11 (64947455-64948249)
               

               
               1-752, gnl|Mm7|chr19 (5739712-5739019)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-752, gnl|bosTau2|chr29 (38492715-38491962)
               

               
               1-752, gnl|Hg17|chr11 (64947455-64948249)
               

               
               1-752, gnl|Mm7|chr19 (5739712-5739019)

	1-90, + strand, RNAz p=0.806762
	140-258, - strand, RNAz p=0.571288
	609-727, - strand, RNAz p=0.768242

	1-752, gnl\|bosTau2\|chr29 (38492715-38491962)
	1-752, gnl\|Hg17\|chr11 (64947455-64948249)
	1-752, gnl\|Mm7\|chr19 (5739712-5739019)