Non-Coding RNA Search

Ss1.1-Pig3-SRG8009H05.3

Sequence:


               
               GGATCTTTCCTCTGAGGAACGCTTTCATGTTGAATTACACTTTAGTCCAGGAGCCAAAGG
ATGTGAAGAAGACAAAAATTTACCATCTGGCTATGGATATAGACCAGCTTCAAGGGAGAA
TGAAGGCAGGAGATCTTTTAAAATTGATAGTGATGACGAACCACATACTTCTAAAAAAGA
TGAGGTTGATCGAGCTGTGATATTGTTTAAACCCATGGTATCAGAGCCAATTCATATACA
CAGGAAGTCTCCACTTCCAAGATCTAGGAAGATGGCTACAAATGAAGTAAGTACAGGTGT
CGGAGCATGTCTTTTTTGAAGTAAACTAACTGTATACTTTAATAAAACAGAAAAGAAAAT
ACAGCTTTAATTATCAAGCTTGGAAACCTAACAGATTTTTAATTGTCAACTTTATTTTTC
AAAATAAATTTTTGAGAATATAGAGGTAGTTAGAAAATACAAAGATTAGTTTTAAAATTT
GGAGCTTTATGAATAGTTTTTATAACAAAGTTGAGTAAAAATGTAAAATAAGGCCTTTCT
AAGAATTGATCCATTTTTTTGTCTTGTTGCTCTAAGTTATTCTAATGAAGAACTTTTTTA
GAAAGTCTGATCTAATGGATCAGGAATAATCTTTGCTTAAAGTAGTGAGGAATTGCCAGA
AATGTTCCAGTAACAACTGATTCAATGACACTGTAAATTAAAGTGTAAAATTCTAAATTG
TTTACCTGATTACAAAAATCAGTATAGAAATTTGAAAATTTGATGCTATAGTTGAAAAAT
TTACCTCTGTATTAAGATCTACAATTAAATAGCTTAGGCTAATTATATGATCACTAATAA
ACAGTTAAATAACTACTATAATAACATTTAAAAAAATTAATGTTTTAAAAAACTACTATA
AAAACATTTAAAAAGAAAGTTGAACCATTGGAATGAAGCTTAAGTCAGTCTTTAACATCT
GTATACATTTTTATACTTGAAATACCTTTATTTCAGGTTATTTATATTCTCCATAGTACT
GATTTGAGATCTGTGTTTATGTTTTCTAAATGCTTAAGTAAAAGTATAAAGCAAAAGTTT
AACCTTAAGAATCATCAACTTTTAAGTGAGAAAAATATTTTTTGTTGACGATTGATTAAA
TATGCCAAATCTTAAGTTAGGCATACACCTAGCAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATCTTTCCTCTGAGGAACGCTTTCATGTTGAATTACACTTTAGTCCAGGAGCCAAAGG
ATGTGAAGAAGACAAAAATTTACCATCTGGCTATGGATATAGACCAGCTTCAAGGGAGAA
TGAAGGCAGGAGATCTTTTAAAATTGATAGTGATGACGAACCACATACTTCTAAAAAAGA
TGAGGTTGATCGAGCTGTGATATTGTTTAAACCCATGGTATCAGAGCCAATTCATATACA
CAGGAAGTCTCCACTTCCAAGATCTAGGAAGATGGCTACAAATGAAGTAAGTACAGGTGT
CGGAGCATGTCTTTTTTGAAGTAAACTAACTGTATACTTTAATAAAACAGAAAAGAAAAT
ACAGCTTTAATTATCAAGCTTGGAAACCTAACAGATTTTTAATTGTCAACTTTATTTTTC
AAAATAAATTTTTGAGAATATAGAGGTAGTTAGAAAATACAAAGATTAGTTTTAAAATTT
GGAGCTTTATGAATAGTTTTTATAACAAAGTTGAGTAAAAATGTAAAATAAGGCCTTTCT
AAGAATTGATCCATTTTTTTGTCTTGTTGCTCTAAGTTATTCTAATGAAGAACTTTTTTA
GAAAGTCTGATCTAATGGATCAGGAATAATCTTTGCTTAAAGTAGTGAGGAATTGCCAGA
AATGTTCCAGTAACAACTGATTCAATGACACTGTAAATTAAAGTGTAAAATTCTAAATTG
TTTACCTGATTACAAAAATCAGTATAGAAATTTGAAAATTTGATGCTATAGTTGAAAAAT
TTACCTCTGTATTAAGATCTACAATTAAATAGCTTAGGCTAATTATATGATCACTAATAA
ACAGTTAAATAACTACTATAATAACATTTAAAAAAATTAATGTTTTAAAAAACTACTATA
AAAACATTTAAAAAGAAAGTTGAACCATTGGAATGAAGCTTAAGTCAGTCTTTAACATCT
GTATACATTTTTATACTTGAAATACCTTTATTTCAGGTTATTTATATTCTCCATAGTACT
GATTTGAGATCTGTGTTTATGTTTTCTAAATGCTTAAGTAAAAGTATAAAGCAAAAGTTT
AACCTTAAGAATCATCAACTTTTAAGTGAGAAAAATATTTTTTGTTGACGATTGATTAAA
TATGCCAAATCTTAAGTTAGGCATACACCTAGCAGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               156-275, + strand, RNAz p=0.773506

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               156-275, + strand, RNAz p=0.773506

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               117-873, gnl|bosTau2|chr7 (64968180-64968939)
               

               
               117-873, gnl|Hg17|chr5 (102543619-102544698)
               

               
               117-873, gnl|Mm7|chr1 (97576032-97575112)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               117-873, gnl|bosTau2|chr7 (64968180-64968939)
               

               
               117-873, gnl|Hg17|chr5 (102543619-102544698)
               

               
               117-873, gnl|Mm7|chr1 (97576032-97575112)

	117-873, gnl\|bosTau2\|chr7 (64968180-64968939)
	117-873, gnl\|Hg17\|chr5 (102543619-102544698)
	117-873, gnl\|Mm7\|chr1 (97576032-97575112)