Ss1.1-Pig3-SRG8009I09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAAAATGAAGCCATTTTTATATTACGAGCCACTCACGGAGGTTATTTGTACACAGGTAGA TGGGCGGGAGGACCAAGGAGAATAAAGGGATTAAAAAAGCACAGAGACACGCTTAACACA GCAGACCCGCAGGGCAGACGGAGCGTAGGGCCAGGAAACCCACCCACGGGACAGGACGAC TGTAAAGACACGTCCTGATGCCAGTCGGGCTTTCGCAACCAGCGTCATGAGTGGAATCAC CTTCCTTGGGACCCGCCCCGCACGCTGCTCAAGGGCGCACACCCGGGGCCCCTCCCTCAG CCGCCCCCCGAGGGGTCACCTACACTGCATGGACAAGGGCGACACAATCTCCTCATCCAT GTCGTCCACGTCGTCCGTCATGATGAAGTGGGCCGGGCTGGGGCGCGTGCTGCCCATCCA GCTGGGGTCTATGTTCAGGGCGGCCACCAGGGAGTGGATGCCGGGGTTATTGACGATCTG GAAGCCGCACAGGATCTCTATCTGCTGCCAGCGGTGGAGGCGCTCCCGCAGCGCTGCTGT CACCTCGCTCAAAGCTTGCTTAGCTGTTAGGATTTTATGATCCACATCGTCCAGCGAAGA GCTGTGGGCCACGTGGAAGGTGCCAAAGAGTGTGTTTCTCTTCTTTTTTATCTTCTCAGC CCCCTCCTTGGCCACCAGCAGCTGCTTCTCGGCGTTCTGCTTCTTGATGTTGTAGTACTG CACCTCCACCTCGTGCGTCAGCTGCAGCCACTTCTGCAGGGCCTCCGGGGCGTACCACGC GCTGTGAGACTCCAGCTCCTTCTCCGCTTTCCTCAGGGCCTCCCGGACCTGTTCCAGCTC CTCCTCCGCATACTTCTGGCGGCTCCGCTCGTTCTCCGTACCCTCCCGCAGCTCCTTCAG CCGCTGGGCTTCCTGCTTGGCAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAAAATGAAGCCATTTTTATATTACGAGCCACTCACGGAGGTTATTTGTACACAGGTAGA TGGGCGGGAGGACCAAGGAGAATAAAGGGATTAAAAAAGCACAGAGACACGCTTAACACA GCAGACCCGCAGGGCAGACGGAGCGTAGGGCCAGGAAACCCACCCACGGGACAGGACGAC TGTAAAGACACGTCCTGATGCCAGTCGGGCTTTCGCAACCAGCGTCATGAGTGGAATCAC CTTCCTTGGGACCCGCCCCGCACGCTGCTCAAGGGCGCACACCCGGGGCCCCTCCCTCAG CCGCCCCCCGAGGGGTCACCTACACTGCATGGACAAGGGCGACACAATCTCCTCATCCAT GTCGTCCACGTCGTCCGTCATGATGAAGTGGGCCGGGCTGGGGCGCGTGCTGCCCATCCA GCTGGGGTCTATGTTCAGGGCGGCCACCAGGGAGTGGATGCCGGGGTTATTGACGATCTG GAAGCCGCACAGGATCTCTATCTGCTGCCAGCGGTGGAGGCGCTCCCGCAGCGCTGCTGT CACCTCGCTCAAAGCTTGCTTAGCTGTTAGGATTTTATGATCCACATCGTCCAGCGAAGA GCTGTGGGCCACGTGGAAGGTGCCAAAGAGTGTGTTTCTCTTCTTTTTTATCTTCTCAGC CCCCTCCTTGGCCACCAGCAGCTGCTTCTCGGCGTTCTGCTTCTTGATGTTGTAGTACTG CACCTCCACCTCGTGCGTCAGCTGCAGCCACTTCTGCAGGGCCTCCGGGGCGTACCACGC GCTGTGAGACTCCAGCTCCTTCTCCGCTTTCCTCAGGGCCTCCCGGACCTGTTCCAGCTC CTCCTCCGCATACTTCTGGCGGCTCCGCTCGTTCTCCGTACCCTCCCGCAGCTCCTTCAG CCGCTGGGCTTCCTGCTTGGCAAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 290-409, + strand, RNAz p=0.600259 | |
| 654-773, - strand, RNAz p=0.794358 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 290-409, + strand, RNAz p=0.600259 | |
| 654-773, - strand, RNAz p=0.794358 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 3-243, gnl|bosTau2|chr15 (33144947-33144699) | |
| 3-243, gnl|Hg17|chr11 (4061646-4061410) | |
| 3-243, gnl|Mm7|chr7 (98473756-98473525) | |
| 290-559, gnl|bosTau2|chr15 (33144628-33144360) | |
| 290-559, gnl|canFam2|chr21 (29590059-29590310) | |
| 290-559, gnl|danRer3|chr21 (16674182-16674436) | |
| 290-559, gnl|dasNov1|scaffold_133 (156906-156690) | |
| 290-559, gnl|echTel1|scaffold_285415 (1804-2055) | |
| 290-559, gnl|fr1|chrUn (56730860-56730624) | |
| 290-559, gnl|galGal2|chr1 (188234673-188234434) | |
| 290-559, gnl|hg17|chr11 (4061025-4061279) | |
| 290-559, gnl|Hg17|chr11 (4061336-4061069) | |
| 290-559, gnl|loxAfr1|scaffold_18161 (35348-35580) | |
| 290-559, gnl|mm7|chr7 (98473139-98473391) | |
| 290-559, gnl|Mm7|chr7 (98473448-98473181) | |
| 290-559, gnl|monDom2|scaffold_74 (7255905-7256198) | |
| 290-559, gnl|oryCun1|scaffold_201120 (108026-108286) | |
| 290-559, gnl|panTro1|chr9 (4196101-4196355) | |
| 290-559, gnl|rheMac2|chr14 (69480539-69480285) | |
| 290-559, gnl|rn3|chr1 (159994141-159994393) | |
| 290-559, gnl|tetNig1|chr16 (4581194-4580961) | |
| 290-559, gnl|xenTro1|scaffold_1339 (82733-82966) | |
| 654-832, gnl|bosTau2|chr15 (33143463-33143286) | |
| 654-832, gnl|canFam2|chr21 (29589068-29589260) | |
| 654-832, gnl|danRer3|chr21 (16665625-16665802) | |
| 654-832, gnl|dasNov1|scaffold_133 (158088-157902) | |
| 654-832, gnl|echTel1|scaffold_285415 (791-984) | |
| 654-832, gnl|fr1|chrUn (56731459-56731265) | |
| 654-832, gnl|galGal2|chr1 (188236039-188235857) | |
| 654-832, gnl|hg17|chr11 (4059974-4060166) | |
| 654-832, gnl|Hg17|chr11 (4060163-4059986) | |
| 654-832, gnl|loxAfr1|scaffold_18161 (34121-34306) | |
| 654-832, gnl|mm7|chr7 (98472056-98472248) | |
| 654-832, gnl|Mm7|chr7 (98472245-98472068) | |
| 654-832, gnl|monDom2|scaffold_74 (7254398-7254590) | |
| 654-832, gnl|oryCun1|scaffold_75480 (722-531) | |
| 654-832, gnl|panTro1|chr9 (4195050-4195242) | |
| 654-832, gnl|rheMac2|chr14 (69481590-69481398) | |
| 654-832, gnl|rn3|chr1 (159993071-159993263) | |
| 654-832, gnl|tetNig1|chr16 (4581828-4581657) | |
| 654-832, gnl|xenTro1|scaffold_1339 (81651-81828) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-243, gnl|bosTau2|chr15 (33144947-33144699) | |
| 3-243, gnl|Hg17|chr11 (4061646-4061410) | |
| 3-243, gnl|Mm7|chr7 (98473756-98473525) | |
| 290-559, gnl|bosTau2|chr15 (33144628-33144360) | |
| 290-559, gnl|canFam2|chr21 (29590059-29590310) | |
| 290-559, gnl|danRer3|chr21 (16674182-16674436) | |
| 290-559, gnl|dasNov1|scaffold_133 (156906-156690) | |
| 290-559, gnl|echTel1|scaffold_285415 (1804-2055) | |
| 290-559, gnl|fr1|chrUn (56730860-56730624) | |
| 290-559, gnl|galGal2|chr1 (188234673-188234434) | |
| 290-559, gnl|hg17|chr11 (4061025-4061279) | |
| 290-559, gnl|Hg17|chr11 (4061336-4061069) | |
| 290-559, gnl|loxAfr1|scaffold_18161 (35348-35580) | |
| 290-559, gnl|mm7|chr7 (98473139-98473391) | |
| 290-559, gnl|Mm7|chr7 (98473448-98473181) | |
| 290-559, gnl|monDom2|scaffold_74 (7255905-7256198) | |
| 290-559, gnl|oryCun1|scaffold_201120 (108026-108286) | |
| 290-559, gnl|panTro1|chr9 (4196101-4196355) | |
| 290-559, gnl|rheMac2|chr14 (69480539-69480285) | |
| 290-559, gnl|rn3|chr1 (159994141-159994393) | |
| 290-559, gnl|tetNig1|chr16 (4581194-4580961) | |
| 290-559, gnl|xenTro1|scaffold_1339 (82733-82966) | |
| 654-832, gnl|bosTau2|chr15 (33143463-33143286) | |
| 654-832, gnl|canFam2|chr21 (29589068-29589260) | |
| 654-832, gnl|danRer3|chr21 (16665625-16665802) | |
| 654-832, gnl|dasNov1|scaffold_133 (158088-157902) | |
| 654-832, gnl|echTel1|scaffold_285415 (791-984) | |
| 654-832, gnl|fr1|chrUn (56731459-56731265) | |
| 654-832, gnl|galGal2|chr1 (188236039-188235857) | |
| 654-832, gnl|hg17|chr11 (4059974-4060166) | |
| 654-832, gnl|Hg17|chr11 (4060163-4059986) | |
| 654-832, gnl|loxAfr1|scaffold_18161 (34121-34306) | |
| 654-832, gnl|mm7|chr7 (98472056-98472248) | |
| 654-832, gnl|Mm7|chr7 (98472245-98472068) | |
| 654-832, gnl|monDom2|scaffold_74 (7254398-7254590) | |
| 654-832, gnl|oryCun1|scaffold_75480 (722-531) | |
| 654-832, gnl|panTro1|chr9 (4195050-4195242) | |
| 654-832, gnl|rheMac2|chr14 (69481590-69481398) | |
| 654-832, gnl|rn3|chr1 (159993071-159993263) | |
| 654-832, gnl|tetNig1|chr16 (4581828-4581657) | |
| 654-832, gnl|xenTro1|scaffold_1339 (81651-81828) |