Non-Coding RNA Search

Ss1.1-Pig3-SRG8009I10.5

Sequence:


               
               GTTTCAGTCTAGAAGGCTTGACAGGAGGAGCTGGTATTGGAAACAAGCCGTCCTCATCTC
TAGAAGGAAACTCATCAAACACCAGAGAACTCAGGCACCCTTTCAGTGGCCAGGAAAGGG
GTGACTCTCTGGTGTCACTTTCAGAAGAGGATCTTGAATCAGGCCAGAGGGAACATAGAA
TGTGTAATCAGCAGACATGTCACAGATCTAAACAACAGGGATTTAATTACTGTACATCAG
CCGTTTCTTCTCCACTGACAAAATCCGTCTCATTAATGACAATCAGCCATCCTGGGTTGG
ACAGTACACGGCCCTTCCACAGCACCAGCTCTAATCTCACTGGGAGTATAACAGAAGAGA
ACTTTAATTTCCTGCCACAAAGCCCCAAGAAAGATTTTGAAATAAAGAGCGGAACCAAAG
TCAGTCGTACGTTCAGCTACATCAAGAACAAAATGTCCAGCAGTAAAAAGAGCAAGGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTCAGTCTAGAAGGCTTGACAGGAGGAGCTGGTATTGGAAACAAGCCGTCCTCATCTC
TAGAAGGAAACTCATCAAACACCAGAGAACTCAGGCACCCTTTCAGTGGCCAGGAAAGGG
GTGACTCTCTGGTGTCACTTTCAGAAGAGGATCTTGAATCAGGCCAGAGGGAACATAGAA
TGTGTAATCAGCAGACATGTCACAGATCTAAACAACAGGGATTTAATTACTGTACATCAG
CCGTTTCTTCTCCACTGACAAAATCCGTCTCATTAATGACAATCAGCCATCCTGGGTTGG
ACAGTACACGGCCCTTCCACAGCACCAGCTCTAATCTCACTGGGAGTATAACAGAAGAGA
ACTTTAATTTCCTGCCACAAAGCCCCAAGAAAGATTTTGAAATAAAGAGCGGAACCAAAG
TCAGTCGTACGTTCAGCTACATCAAGAACAAAATGTCCAGCAGTAAAAAGAGCAAGGAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61868544|ref|XP_580384.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61868544|ref|XP_580384.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-194, - strand, RNAz p=0.960896
               

               
               63-172, - strand, RNAz p=0.977458

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-194, - strand, RNAz p=0.960896
               

               
               63-172, - strand, RNAz p=0.977458

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-194, gnl|bosTau2|chr21 (9765294-9765487)
               

               
               1-194, gnl|canFam2|chr3 (52102758-52103001)
               

               
               1-194, gnl|danRer3|chrNA (113263459-113263219)
               

               
               1-194, gnl|dasNov1|scaffold_34901 (536-292)
               

               
               1-194, gnl|echTel1|scaffold_259870 (8734-8506)
               

               
               1-194, gnl|galGal2|chr10 (14572148-14571928)
               

               
               1-194, gnl|hg17|chr15 (84008765-84009008)
               

               
               1-194, gnl|Hg17|chr15 (84008797-84008990)
               

               
               1-194, gnl|loxAfr1|scaffold_4533 (8930-9170)
               

               
               1-194, gnl|mm7|chr7 (71537079-71537320)
               

               
               1-194, gnl|Mm7|chr7 (71537109-71537302)
               

               
               1-194, gnl|monDom2|scaffold_12 (71798309-71798551)
               

               
               1-194, gnl|oryCun1|scaffold_209163 (50486-50732)
               

               
               1-194, gnl|panTro1|chr16 (84844601-84844844)
               

               
               1-194, gnl|rheMac2|chr7 (65267001-65267244)
               

               
               1-194, gnl|rn3|chr1 (131370678-131370921)
               

               
               1-194, gnl|xenTro1|scaffold_71 (1204754-1204497)
               


               
               345-480, gnl|bosTau2|chr21 (9780316-9780451)
               

               
               345-480, gnl|Hg17|chr15 (84028974-84029112)
               

               
               345-480, gnl|Mm7|chr7 (71549293-71549431)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-194, gnl|bosTau2|chr21 (9765294-9765487)
               

               
               1-194, gnl|canFam2|chr3 (52102758-52103001)
               

               
               1-194, gnl|danRer3|chrNA (113263459-113263219)
               

               
               1-194, gnl|dasNov1|scaffold_34901 (536-292)
               

               
               1-194, gnl|echTel1|scaffold_259870 (8734-8506)
               

               
               1-194, gnl|galGal2|chr10 (14572148-14571928)
               

               
               1-194, gnl|hg17|chr15 (84008765-84009008)
               

               
               1-194, gnl|Hg17|chr15 (84008797-84008990)
               

               
               1-194, gnl|loxAfr1|scaffold_4533 (8930-9170)
               

               
               1-194, gnl|mm7|chr7 (71537079-71537320)
               

               
               1-194, gnl|Mm7|chr7 (71537109-71537302)
               

               
               1-194, gnl|monDom2|scaffold_12 (71798309-71798551)
               

               
               1-194, gnl|oryCun1|scaffold_209163 (50486-50732)
               

               
               1-194, gnl|panTro1|chr16 (84844601-84844844)
               

               
               1-194, gnl|rheMac2|chr7 (65267001-65267244)
               

               
               1-194, gnl|rn3|chr1 (131370678-131370921)
               

               
               1-194, gnl|xenTro1|scaffold_71 (1204754-1204497)
               


               
               345-480, gnl|bosTau2|chr21 (9780316-9780451)
               

               
               345-480, gnl|Hg17|chr15 (84028974-84029112)
               

               
               345-480, gnl|Mm7|chr7 (71549293-71549431)

	40-194, - strand, RNAz p=0.960896
	63-172, - strand, RNAz p=0.977458

	1-194, gnl\|bosTau2\|chr21 (9765294-9765487)
	1-194, gnl\|canFam2\|chr3 (52102758-52103001)
	1-194, gnl\|danRer3\|chrNA (113263459-113263219)
	1-194, gnl\|dasNov1\|scaffold_34901 (536-292)
	1-194, gnl\|echTel1\|scaffold_259870 (8734-8506)
	1-194, gnl\|galGal2\|chr10 (14572148-14571928)
	1-194, gnl\|hg17\|chr15 (84008765-84009008)
	1-194, gnl\|Hg17\|chr15 (84008797-84008990)
	1-194, gnl\|loxAfr1\|scaffold_4533 (8930-9170)
	1-194, gnl\|mm7\|chr7 (71537079-71537320)
	1-194, gnl\|Mm7\|chr7 (71537109-71537302)
	1-194, gnl\|monDom2\|scaffold_12 (71798309-71798551)
	1-194, gnl\|oryCun1\|scaffold_209163 (50486-50732)
	1-194, gnl\|panTro1\|chr16 (84844601-84844844)
	1-194, gnl\|rheMac2\|chr7 (65267001-65267244)
	1-194, gnl\|rn3\|chr1 (131370678-131370921)
	1-194, gnl\|xenTro1\|scaffold_71 (1204754-1204497)

	345-480, gnl\|bosTau2\|chr21 (9780316-9780451)
	345-480, gnl\|Hg17\|chr15 (84028974-84029112)
	345-480, gnl\|Mm7\|chr7 (71549293-71549431)