Non-Coding RNA Search

Ss1.1-Pig3-SRG8009I13.3

Sequence:


               
               TTGAAAGAGGTTTTCTGATCATCGTTATCTTCATATTAAAACAAAATCCGTTAAGTATTT
TTAATCAGCTAGCTTCTGCTGTTCTTTAACCTCCTATGTATATATATATATGACTCCGTG
ATGTGGGAGACGTCACTTAGAGACATGAGAATGTGTATTTATTCTCAGAAAGTTAATTAA
CAGATGTTCTGTTAACAACCAGTTCATAAAATGTAGAAAGTAGTTGAATATTCAGCCTCC
TAAGTGTCTTAAGAAATTTGTATTGTTCATTATATTTTCAATAATATATCTTAGGGGGAA
TTGGATACAGGTAAGCACAAAGTTAAAACCCATCGTTTCATCTCATCTGAGTTTCTGAAT
CTCATCCCATTTGAGTTCTTATTAAGCACTCTTTGAAGTTTTATTGACTGTAAGTTATAT
TAAAAAATCAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGAAAGAGGTTTTCTGATCATCGTTATCTTCATATTAAAACAAAATCCGTTAAGTATTT
TTAATCAGCTAGCTTCTGCTGTTCTTTAACCTCCTATGTATATATATATATGACTCCGTG
ATGTGGGAGACGTCACTTAGAGACATGAGAATGTGTATTTATTCTCAGAAAGTTAATTAA
CAGATGTTCTGTTAACAACCAGTTCATAAAATGTAGAAAGTAGTTGAATATTCAGCCTCC
TAAGTGTCTTAAGAAATTTGTATTGTTCATTATATTTTCAATAATATATCTTAGGGGGAA
TTGGATACAGGTAAGCACAAAGTTAAAACCCATCGTTTCATCTCATCTGAGTTTCTGAAT
CTCATCCCATTTGAGTTCTTATTAAGCACTCTTTGAAGTTTTATTGACTGTAAGTTATAT
TAAAAAATCAGT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               77-190, + strand, RNAz p=0.893297
               

               
               110-207, - strand, RNAz p=0.521339

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-190, + strand, RNAz p=0.893297
               

               
               110-207, - strand, RNAz p=0.521339

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_005898, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_005898, +

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-432, gnl|bosTau2|chr15 (39044240-39044671)
               

               
               1-432, gnl|canFam2|chr18 (36715642-36715265)
               

               
               1-432, gnl|dasNov1|scaffold_14299 (1838-1462)
               

               
               1-432, gnl|echTel1|scaffold_291872 (4427-4850)
               

               
               1-432, gnl|hg17|chr11 (34080086-34080452)
               

               
               1-432, gnl|Hg17|chr11 (34080157-34080558)
               

               
               1-432, gnl|loxAfr1|scaffold_1652 (106876-107422)
               

               
               1-432, gnl|mm7|chr2 (103615081-103614695)
               

               
               1-432, gnl|Mm7|chr2 (103614979-103614592)
               

               
               1-432, gnl|oryCun1|scaffold_198377 (54044-54450)
               

               
               1-432, gnl|panTro1|chr9 (34464564-34464929)
               

               
               1-432, gnl|rheMac2|chr14 (37719604-37719244)
               

               
               1-432, gnl|rn3|chr3 (88953797-88953387)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-432, gnl|bosTau2|chr15 (39044240-39044671)
               

               
               1-432, gnl|canFam2|chr18 (36715642-36715265)
               

               
               1-432, gnl|dasNov1|scaffold_14299 (1838-1462)
               

               
               1-432, gnl|echTel1|scaffold_291872 (4427-4850)
               

               
               1-432, gnl|hg17|chr11 (34080086-34080452)
               

               
               1-432, gnl|Hg17|chr11 (34080157-34080558)
               

               
               1-432, gnl|loxAfr1|scaffold_1652 (106876-107422)
               

               
               1-432, gnl|mm7|chr2 (103615081-103614695)
               

               
               1-432, gnl|Mm7|chr2 (103614979-103614592)
               

               
               1-432, gnl|oryCun1|scaffold_198377 (54044-54450)
               

               
               1-432, gnl|panTro1|chr9 (34464564-34464929)
               

               
               1-432, gnl|rheMac2|chr14 (37719604-37719244)
               

               
               1-432, gnl|rn3|chr3 (88953797-88953387)

	77-190, + strand, RNAz p=0.893297
	110-207, - strand, RNAz p=0.521339

	1-432, gnl\|bosTau2\|chr15 (39044240-39044671)
	1-432, gnl\|canFam2\|chr18 (36715642-36715265)
	1-432, gnl\|dasNov1\|scaffold_14299 (1838-1462)
	1-432, gnl\|echTel1\|scaffold_291872 (4427-4850)
	1-432, gnl\|hg17\|chr11 (34080086-34080452)
	1-432, gnl\|Hg17\|chr11 (34080157-34080558)
	1-432, gnl\|loxAfr1\|scaffold_1652 (106876-107422)
	1-432, gnl\|mm7\|chr2 (103615081-103614695)
	1-432, gnl\|Mm7\|chr2 (103614979-103614592)
	1-432, gnl\|oryCun1\|scaffold_198377 (54044-54450)
	1-432, gnl\|panTro1\|chr9 (34464564-34464929)
	1-432, gnl\|rheMac2\|chr14 (37719604-37719244)
	1-432, gnl\|rn3\|chr3 (88953797-88953387)