Non-Coding RNA Search

Ss1.1-Pig3-SRG8009J23.3

Sequence:


               
               AGCTTCTTCTAGCAGTCCTGGATTTGGGTGGGTGTTCTGGAGAAGACTCCGAACTGCTGC
TTCCTTCAGGAGAAGGGCCTCTGCCTTTGCTGGATGAACCTGATCTGCTTCGTCTAGGAA
GGACACGAGGGGCAGGAGCCTTGGGTTCGGGAGAAGAATCATAACCACTCTGTGCCCTGG
GTGCCACCCCCGGCTTATCTTTATCTTCAGGGGATGAACTACGCCGAGGAGAAGGCTGAG
ATTTGCTGTCGACCTCTGGAGAGGATCCAGAGCCACTCCTTGGTCTAACTGACATTCGTG
TCTTAGCTTTAGAATCTGGAGAAGACTCTGATTCACTCCTCTCCTGAGGGGAAGCACTGG
GTTTCCCATCAAGTTCTTGAGAAGATCCAGACCGACGTCTCTGCCCCAGCGGAGTCCTAG
CCACAGTCTTCTGTTCCACTGATGATTCTGACCCACTTCTCTCTCTCTGAGGACTAAGAC
ACTTGTTGTTGAGCTCTGGGGATGATGGAGACCGACTCCTTGGCCTAGGAGTCTGAGGCA
AAATTTTTGGTTCTGGAGAAGAATCACATTCACTTCTCCCCCTGGATGGTGTTCTAGGTA
TATCTTTCATCCCAGGAGAAGACCCAGATAAACTGTGCCTTGAGGGAGTCCCAGACCCAT
CTCTCAGTCCTGGGGATGACCCAGACCGGCTTCTCTGTGAAGGGGTTCTGGGTAAACCAT
CTTTCAGTTCAGGAGAAGACGTGGAACTACTTCTTCCCCTTGAGGGTGTTCGGGGTACAG
CATCAAGTACTGGCGAAGAGACACTCTGATTTGAGGACATTCCTGCTTTTTCCACCGCAT
CTGGGGATAACTCTGAACTGCTGCGTCTGGAGGACCTTGTTGATTCTTTCATGTCGAGAG
ATGGATCTGTCTCCAGCTGATTAGGAAAAGGTCCATTCAAATCTTTACCCTCAGGAGAAA
ACTCAGTGCTCATCTCTGCAACAGGGCCTGAGTTTCTAAATTCTGAAGGTGATCCAAAAC
TATTCTCCCTGGGAGGGGAGCTAGACAGTTCTTTACGTTCTGGAGAAAACTGCGGCCCAC
TCCAAGTTGAGGCTACCGCAGGGACTTCTTCCACAGAAGCCTGCAACTGTCTCTGGTCAA
GAATCAAAGAGACAGCAGATCTTCCTTCTATTTCAGGAGATGATTCAAAGTTACTTCTGG
CCATTTCTTTAAGTTCTGGAGATAAATGGGGCAGGATCTGGCTTGAGGATTCTTCAGCTT
TCTCTGTCACCTCCATTGATTCCTCATCTTGGCTTGACTTAGCTAACACACTACTCTGGT
CTTTTGTATCTGGAGATGACCCGACACCACCTCTTTCCCTCGAGGCAGTTTCAGGGGTGT
CTCTGATTACTGGTGAAGATTCAGGCCTGTCCTGAACCAAAGGAGAACTCAGTTTGTCTC
CTGGTCTTGGAGATGATGCAGTGACATCCTCCTGAAGGACTGAGCCAGTTTTTTCTTTTG
ATTCAGAAGACTCTAATCTACCCCGCCCCAGAAGAGACTTAGAGTCCAATGCAGGATATG
GAGAAGAATCAGAATGGGTCCTGACCTGCTCAGGAGACAGTCCAGATTTCAGCTTAGGAC
TTGTTGACAATTCGCTTCTATCTTGTCTTGTTGGAGGTTCCAGCTCAGTGACTGGAGATG
GGGACCTGCACCGACCACCCTTTGGAGATGTTTGAGATTTGCTCTGCAGAGATGGAGATT
CAGAATGACTCTGTCTCATTTCTGGACTTGAAGTAACAGATCTGGGATCTGGTGAAGATG
GAGACCGTCCTTTCTGTTGCAAAGATGAACTGAAATAGCTCTCGCCAGGTGGTGTACTAG
ACTTTACTCCCGGACAGAAGGAGAAGGATCCAGAGCAACTCTGTGCTGGTGAATCTGTAG
ACTTCTCTTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTTCTTCTAGCAGTCCTGGATTTGGGTGGGTGTTCTGGAGAAGACTCCGAACTGCTGC
TTCCTTCAGGAGAAGGGCCTCTGCCTTTGCTGGATGAACCTGATCTGCTTCGTCTAGGAA
GGACACGAGGGGCAGGAGCCTTGGGTTCGGGAGAAGAATCATAACCACTCTGTGCCCTGG
GTGCCACCCCCGGCTTATCTTTATCTTCAGGGGATGAACTACGCCGAGGAGAAGGCTGAG
ATTTGCTGTCGACCTCTGGAGAGGATCCAGAGCCACTCCTTGGTCTAACTGACATTCGTG
TCTTAGCTTTAGAATCTGGAGAAGACTCTGATTCACTCCTCTCCTGAGGGGAAGCACTGG
GTTTCCCATCAAGTTCTTGAGAAGATCCAGACCGACGTCTCTGCCCCAGCGGAGTCCTAG
CCACAGTCTTCTGTTCCACTGATGATTCTGACCCACTTCTCTCTCTCTGAGGACTAAGAC
ACTTGTTGTTGAGCTCTGGGGATGATGGAGACCGACTCCTTGGCCTAGGAGTCTGAGGCA
AAATTTTTGGTTCTGGAGAAGAATCACATTCACTTCTCCCCCTGGATGGTGTTCTAGGTA
TATCTTTCATCCCAGGAGAAGACCCAGATAAACTGTGCCTTGAGGGAGTCCCAGACCCAT
CTCTCAGTCCTGGGGATGACCCAGACCGGCTTCTCTGTGAAGGGGTTCTGGGTAAACCAT
CTTTCAGTTCAGGAGAAGACGTGGAACTACTTCTTCCCCTTGAGGGTGTTCGGGGTACAG
CATCAAGTACTGGCGAAGAGACACTCTGATTTGAGGACATTCCTGCTTTTTCCACCGCAT
CTGGGGATAACTCTGAACTGCTGCGTCTGGAGGACCTTGTTGATTCTTTCATGTCGAGAG
ATGGATCTGTCTCCAGCTGATTAGGAAAAGGTCCATTCAAATCTTTACCCTCAGGAGAAA
ACTCAGTGCTCATCTCTGCAACAGGGCCTGAGTTTCTAAATTCTGAAGGTGATCCAAAAC
TATTCTCCCTGGGAGGGGAGCTAGACAGTTCTTTACGTTCTGGAGAAAACTGCGGCCCAC
TCCAAGTTGAGGCTACCGCAGGGACTTCTTCCACAGAAGCCTGCAACTGTCTCTGGTCAA
GAATCAAAGAGACAGCAGATCTTCCTTCTATTTCAGGAGATGATTCAAAGTTACTTCTGG
CCATTTCTTTAAGTTCTGGAGATAAATGGGGCAGGATCTGGCTTGAGGATTCTTCAGCTT
TCTCTGTCACCTCCATTGATTCCTCATCTTGGCTTGACTTAGCTAACACACTACTCTGGT
CTTTTGTATCTGGAGATGACCCGACACCACCTCTTTCCCTCGAGGCAGTTTCAGGGGTGT
CTCTGATTACTGGTGAAGATTCAGGCCTGTCCTGAACCAAAGGAGAACTCAGTTTGTCTC
CTGGTCTTGGAGATGATGCAGTGACATCCTCCTGAAGGACTGAGCCAGTTTTTTCTTTTG
ATTCAGAAGACTCTAATCTACCCCGCCCCAGAAGAGACTTAGAGTCCAATGCAGGATATG
GAGAAGAATCAGAATGGGTCCTGACCTGCTCAGGAGACAGTCCAGATTTCAGCTTAGGAC
TTGTTGACAATTCGCTTCTATCTTGTCTTGTTGGAGGTTCCAGCTCAGTGACTGGAGATG
GGGACCTGCACCGACCACCCTTTGGAGATGTTTGAGATTTGCTCTGCAGAGATGGAGATT
CAGAATGACTCTGTCTCATTTCTGGACTTGAAGTAACAGATCTGGGATCTGGTGAAGATG
GAGACCGTCCTTTCTGTTGCAAAGATGAACTGAAATAGCTCTCGCCAGGTGGTGTACTAG
ACTTTACTCCCGGACAGAAGGAGAAGGATCCAGAGCAACTCTGTGCTGGTGAATCTGTAG
ACTTCTCTTGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5821149|dbj|BAA83716.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5821149|dbj|BAA83716.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               231-350, - strand, RNAz p=0.832871
               

               
               1019-1172, + strand, RNAz p=0.828519

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               231-350, - strand, RNAz p=0.832871
               

               
               1019-1172, + strand, RNAz p=0.828519

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1828, gnl|bosTau2|chr25 (3722223-3724062)
               

               
               1-1828, gnl|Hg17|chr16 (2755544-2753687)
               

               
               1-1828, gnl|Mm7|chr17 (21998852-21997034)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1828, gnl|bosTau2|chr25 (3722223-3724062)
               

               
               1-1828, gnl|Hg17|chr16 (2755544-2753687)
               

               
               1-1828, gnl|Mm7|chr17 (21998852-21997034)

	231-350, - strand, RNAz p=0.832871
	1019-1172, + strand, RNAz p=0.828519

	1-1828, gnl\|bosTau2\|chr25 (3722223-3724062)
	1-1828, gnl\|Hg17\|chr16 (2755544-2753687)
	1-1828, gnl\|Mm7\|chr17 (21998852-21997034)