Non-Coding RNA Search

Ss1.1-Pig3-SRG8009M20.3

Sequence:


               
               GCGACTGGAGTTTTTTTTTTTTTTTTTTTGGGGCCTAAATTTCAAGATAGCCTCTCTCCA
ATCCGGCCCTGAAGCTGGGAGCCACGACCAGGATGGCAGAAGGAAAACAGCCCGGCTTCA
TTCCAAGGGGTAATTATTGAGAGAGAAAGAAACACAGAGAGAGAAAATACCCAAGCGACA
AAGAATAAATCTTTGTTAATTGACCATTTGAAACTTTATAACATGCCAGTCCTTCTCTGG
ACACGATAATATGTTTGCTCATAAGAGATCTACAACTTTTGCACTGACATAGCAAAGGCC
GTAAAAAAACATCTACTGGGCAGAGAGGCCTCCTTCCCATCTAAAGGCTCAGTAAAAACA
CATCCTGGGGATCCAAAGGAGAACCAGGTTCTTAAATTACACCTATAAATTAATCAAGCC
CGGAGCTGCTGGTTTCCCAGCATACACTGGCCTTCTGAGCATCTCTCCCCAAAGTTCAGC
CGCACTTGCCGCAAAGAATCATTTCAAAGCCAGGCCCTCTGGCAAGAAACCACCAAGAGA
CTCCAATCACATCGTGTGCCCAGGACTGATCTGGAAAGAGCAAGGCTCCTGCTCTTGGGC
ACCAGTGATTTAAGGAACACGAAGAACCCTGCCTGCCCCGTCTTTAAATTAACATCAAAA
TTTAATTACTCTTCCTCCAAAACAGCAGTTTCTTAGCAACTCCAAGGGGCTATTCATAGG
GCAAGAACATTCTGAGAGTTGGAGGGCAAGTGAAAACAACTGAGAATTCTTGTTTCTAAA
GCCCAGCCTGGCTTTCTTCTAAAGAGTAGGCGGTGGCAGCTTTTGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGACTGGAGTTTTTTTTTTTTTTTTTTTGGGGCCTAAATTTCAAGATAGCCTCTCTCCA
ATCCGGCCCTGAAGCTGGGAGCCACGACCAGGATGGCAGAAGGAAAACAGCCCGGCTTCA
TTCCAAGGGGTAATTATTGAGAGAGAAAGAAACACAGAGAGAGAAAATACCCAAGCGACA
AAGAATAAATCTTTGTTAATTGACCATTTGAAACTTTATAACATGCCAGTCCTTCTCTGG
ACACGATAATATGTTTGCTCATAAGAGATCTACAACTTTTGCACTGACATAGCAAAGGCC
GTAAAAAAACATCTACTGGGCAGAGAGGCCTCCTTCCCATCTAAAGGCTCAGTAAAAACA
CATCCTGGGGATCCAAAGGAGAACCAGGTTCTTAAATTACACCTATAAATTAATCAAGCC
CGGAGCTGCTGGTTTCCCAGCATACACTGGCCTTCTGAGCATCTCTCCCCAAAGTTCAGC
CGCACTTGCCGCAAAGAATCATTTCAAAGCCAGGCCCTCTGGCAAGAAACCACCAAGAGA
CTCCAATCACATCGTGTGCCCAGGACTGATCTGGAAAGAGCAAGGCTCCTGCTCTTGGGC
ACCAGTGATTTAAGGAACACGAAGAACCCTGCCTGCCCCGTCTTTAAATTAACATCAAAA
TTTAATTACTCTTCCTCCAAAACAGCAGTTTCTTAGCAACTCCAAGGGGCTATTCATAGG
GCAAGAACATTCTGAGAGTTGGAGGGCAAGTGAAAACAACTGAGAATTCTTGTTTCTAAA
GCCCAGCCTGGCTTTCTTCTAAAGAGTAGGCGGTGGCAGCTTTTGTTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               379-534, - strand, RNAz p=0.993278

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               379-534, - strand, RNAz p=0.993278

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               35-828, gnl|bosTau2|chr26 (28916665-28915893)
               

               
               35-828, gnl|Hg17|chr10 (123275014-123275813)
               

               
               35-828, gnl|Mm7|chr7 (126321397-126322114)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-828, gnl|bosTau2|chr26 (28916665-28915893)
               

               
               35-828, gnl|Hg17|chr10 (123275014-123275813)
               

               
               35-828, gnl|Mm7|chr7 (126321397-126322114)

	35-828, gnl\|bosTau2\|chr26 (28916665-28915893)
	35-828, gnl\|Hg17\|chr10 (123275014-123275813)
	35-828, gnl\|Mm7\|chr7 (126321397-126322114)