Non-Coding RNA Search

Ss1.1-Pig3-SRG8009O16.3

Sequence:


               
               GACAATGGCGCAGGGGCAGCGCAAGTTCCATGCGCAGAAGCCAGCGAATACAAGGCGGCG
GCGGCGGCGGCCTCGGCTCGGAACCGGGGCCCGAGGAAGGGCGGTCGCGTTATCGCACCC
AAGAAGGCACGCATCGTGCAGCAGCAGCAGCTCAAGAAGAACCTGGAGGTTGGGATCCGG
AAGAAGATTGAGCATGATGTGGTGATGAAAGCCAGCACCAGCCTGCCCAAAAAGCTGGCG
CTTTTGAAGGCCAGCACCAAGAAGAATGAGGCCTCCTCCTCCACCAAGATGCCTGCCTAA
GGATGCGCCCCATCAGTGATCACCACTGCAGCCCCCTCCTCTGTGCTCATACCTGTGCAG
GTAACCCCATGGGAAAGATGAACTGTGCTCTCCAAAGACTTGAATTGCACCTCGAACTTG
ACTGGGCCCTGGCCCATGATCCAGTGAGTAGCATGTCAGAAGCACACTGACGGACTGGCT
TTGCATGTGCCGAGGTCTCCGCACAGGCCAAGGCCAGGGATCTTTTCACCGACTTCATGT
GTCCCCACTACCCCCTCCCACATCCTGTCTGGATAACTTGGAGCAAGACACCTGACTTTG
TCATTCCTCCCATGGTCACATGCTCCTGTGAGGAGGCTGTGCTGGGGCCTCGGGCCAGGT
GCATGGACCGCCCGGCCAGCCCCAGTTTACACACGAGCCACATGTCCAGGGAAGGGTGGA
CAAGCTTCCGCACCTCCAGCCTGGGGGCTGGGGGAGAGTCTTTTCTTTCTTCCTACCTTG
GGTGACTCACCTGCTTGCCCTCTACAAATATCCCTGTGTCTTCCTGTCTGCCAGGGACAG
GCCAGACAGCTTAGGGAGCCACTTTCCCATTCTCGGGGCAGACACTGATACCACCTTGTA
GAGTCAAAGTGCTGATTAAACCAGAAGCGTTTTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAATGGCGCAGGGGCAGCGCAAGTTCCATGCGCAGAAGCCAGCGAATACAAGGCGGCG
GCGGCGGCGGCCTCGGCTCGGAACCGGGGCCCGAGGAAGGGCGGTCGCGTTATCGCACCC
AAGAAGGCACGCATCGTGCAGCAGCAGCAGCTCAAGAAGAACCTGGAGGTTGGGATCCGG
AAGAAGATTGAGCATGATGTGGTGATGAAAGCCAGCACCAGCCTGCCCAAAAAGCTGGCG
CTTTTGAAGGCCAGCACCAAGAAGAATGAGGCCTCCTCCTCCACCAAGATGCCTGCCTAA
GGATGCGCCCCATCAGTGATCACCACTGCAGCCCCCTCCTCTGTGCTCATACCTGTGCAG
GTAACCCCATGGGAAAGATGAACTGTGCTCTCCAAAGACTTGAATTGCACCTCGAACTTG
ACTGGGCCCTGGCCCATGATCCAGTGAGTAGCATGTCAGAAGCACACTGACGGACTGGCT
TTGCATGTGCCGAGGTCTCCGCACAGGCCAAGGCCAGGGATCTTTTCACCGACTTCATGT
GTCCCCACTACCCCCTCCCACATCCTGTCTGGATAACTTGGAGCAAGACACCTGACTTTG
TCATTCCTCCCATGGTCACATGCTCCTGTGAGGAGGCTGTGCTGGGGCCTCGGGCCAGGT
GCATGGACCGCCCGGCCAGCCCCAGTTTACACACGAGCCACATGTCCAGGGAAGGGTGGA
CAAGCTTCCGCACCTCCAGCCTGGGGGCTGGGGGAGAGTCTTTTCTTTCTTCCTACCTTG
GGTGACTCACCTGCTTGCCCTCTACAAATATCCCTGTGTCTTCCTGTCTGCCAGGGACAG
GCCAGACAGCTTAGGGAGCCACTTTCCCATTCTCGGGGCAGACACTGATACCACCTTGTA
GAGTCAAAGTGCTGATTAAACCAGAAGCGTTTTTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               L10K_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               L10K_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               159-358, - strand, RNAz p=0.980469
               

               
               594-713, - strand, RNAz p=0.967841

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-358, - strand, RNAz p=0.980469
               

               
               594-713, - strand, RNAz p=0.967841

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               1-713, gnl|bosTau2|chr15 (26907101-26907816)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-713, gnl|bosTau2|chr15 (26907101-26907816)

	159-358, - strand, RNAz p=0.980469
	594-713, - strand, RNAz p=0.967841