Non-Coding RNA Search

Ss1.1-Pig3-SRG8010D19.3

Sequence:


               
               GCGGCTCGAGTAGGAATGAAGTAAGGGATTGGCACGTAAAAAGAAGGGAAAATTTAGAGG
TTATAAAGTAATGTCATTAGAAGGGAAGAATTGGGAAGCCACAACTGGGTGCAGTCCAGC
CTGAAGACTTATTTTGTTTGGTGTACATAGTGATTTTTTAAACATTTGAATCAGATGCCA
ATATTGCAATAACAGGAGATTTTACATTACAAAAGTTTTTCAGACTTCTTTTGGGAAACC
TGAGGGTCTGGGAGCATCATGCCCTGTGGCCCATGTGAGGCCACCCTCCACTTTCCTGTT
GTCCCGGGACTGCTCCTGACAGGCATCCACCTTCTTCCCTTGCTTGCTCTGGCTGCCAGA
TGCCTGGCAGAGAAGAAGGGGATGCATACAAGAGGGTAGAGCAAAGGAGTGTGCACTTTA
AATGAACTATTTTCTTGCAATAAGATCTGGGACATGGCAAAAAGTGTCCCAGCTTCTTGT
TTTTGGACCGTTCTCAATGCACACCAGGGATTCTATCTTACTTTTTATAGAGTGGCCTTT
CCAAAATCATGTCTATCTCTATACAAATACTTATTGTTTGCTCATGTTATCTTCTCTGTA
AACAATATTTTTCATCTCTATACAAACCCTCCCAGGTAGGTGTTGCTAGGGTCATTTTTG
CATTTTGCAGTTAGACTGCAAAGTACATTAAGTGGGTGCCTGGTTCAGGCCATGAACAGT
GGAGCACAGCTTGGAAAACCATGTTTAGGTCTTTGTAGCTAATGCCCTTCCTACTCTCTA
CTCCTACCTCAGTAATTTCTACTGTAGTTAAAACATGAACTTGTATGTTAATGCTTCTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGTAGGAATGAAGTAAGGGATTGGCACGTAAAAAGAAGGGAAAATTTAGAGG
TTATAAAGTAATGTCATTAGAAGGGAAGAATTGGGAAGCCACAACTGGGTGCAGTCCAGC
CTGAAGACTTATTTTGTTTGGTGTACATAGTGATTTTTTAAACATTTGAATCAGATGCCA
ATATTGCAATAACAGGAGATTTTACATTACAAAAGTTTTTCAGACTTCTTTTGGGAAACC
TGAGGGTCTGGGAGCATCATGCCCTGTGGCCCATGTGAGGCCACCCTCCACTTTCCTGTT
GTCCCGGGACTGCTCCTGACAGGCATCCACCTTCTTCCCTTGCTTGCTCTGGCTGCCAGA
TGCCTGGCAGAGAAGAAGGGGATGCATACAAGAGGGTAGAGCAAAGGAGTGTGCACTTTA
AATGAACTATTTTCTTGCAATAAGATCTGGGACATGGCAAAAAGTGTCCCAGCTTCTTGT
TTTTGGACCGTTCTCAATGCACACCAGGGATTCTATCTTACTTTTTATAGAGTGGCCTTT
CCAAAATCATGTCTATCTCTATACAAATACTTATTGTTTGCTCATGTTATCTTCTCTGTA
AACAATATTTTTCATCTCTATACAAACCCTCCCAGGTAGGTGTTGCTAGGGTCATTTTTG
CATTTTGCAGTTAGACTGCAAAGTACATTAAGTGGGTGCCTGGTTCAGGCCATGAACAGT
GGAGCACAGCTTGGAAAACCATGTTTAGGTCTTTGTAGCTAATGCCCTTCCTACTCTCTA
CTCCTACCTCAGTAATTTCTACTGTAGTTAAAACATGAACTTGTATGTTAATGCTTCTTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               646-763, + strand, RNAz p=0.88454

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               646-763, + strand, RNAz p=0.88454

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               11-274, gnl|bosTau2|chrX (31537192-31536928)
               

               
               11-274, gnl|Hg17|chrX (37896520-37895946)
               


               
               331-840, gnl|bosTau2|chrX (31536900-31536399)
               

               
               331-840, gnl|Hg17|chrX (37895904-37895394)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-274, gnl|bosTau2|chrX (31537192-31536928)
               

               
               11-274, gnl|Hg17|chrX (37896520-37895946)
               


               
               331-840, gnl|bosTau2|chrX (31536900-31536399)
               

               
               331-840, gnl|Hg17|chrX (37895904-37895394)

	11-274, gnl\|bosTau2\|chrX (31537192-31536928)
	11-274, gnl\|Hg17\|chrX (37896520-37895946)

	331-840, gnl\|bosTau2\|chrX (31536900-31536399)
	331-840, gnl\|Hg17\|chrX (37895904-37895394)