Non-Coding RNA Search

Ss1.1-Pig3-SRG8010J05.5

Sequence:


               
               CAGCAAATCTCCTGGGAGCTTGCGTTATAGTTACAAAGATAGTTTTGGGTCAGCTGTGCC
AAGAAACGTCAGTGGCTTTCCTCAGTATCCTTCAGGACAAGATAAGGGGGACTTCCCTGG
CCACGCGGAGCGAAAGGGTCGGAATGAGAAGTTCCCCAGCCTCCTGCAGGAAGTGCTTCA
GGGTTATCACCACCACCCCGACCGCAGGTATTCTATGAGCGCTCATGAGCACCAGGGCAT
GGCCGGGGGCCTGGAAAGAGCCACGAGGCCTAATGTCCTAGTTAGTCAAACCAATGAATT
ATCGAGCAGGGGCCTTTTGAACAAAAGCATTGGGTCCCTCATAGAAAACCCCCACTGGGG
CCCATGGGAAAGGAAATCAAGCGGCACAGCCCCCGAAATGAAACAGATCAACTTGGCTGA
CTATCCAATCCCCAGAAAGTTTGAGATCGAGCCTCAGTCATCAGCCCATGAGCCCGGGGG
TTCCCTCTATGAGAGGAGATCCGTGATCTGTGACATTTCTCCAATAAGACAGATTGTCAG
GGACCCAGGGGCTCACTCACTGGCCCACATGGGTGCCGACACCAGACTTGGGAGGAATGA
ACGTCTCAATCCAAGTTTAAGTCAGTCAGTCATTCTTCCAGGTGGGCTGGTGTCCATGGA
AACAAAGCTGAAGTCCCAGAGTGGGCAGATAAAAGAGGAAGACTTCGAACAGCCCAAATT
GCAAGCTAGCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCAAATCTCCTGGGAGCTTGCGTTATAGTTACAAAGATAGTTTTGGGTCAGCTGTGCC
AAGAAACGTCAGTGGCTTTCCTCAGTATCCTTCAGGACAAGATAAGGGGGACTTCCCTGG
CCACGCGGAGCGAAAGGGTCGGAATGAGAAGTTCCCCAGCCTCCTGCAGGAAGTGCTTCA
GGGTTATCACCACCACCCCGACCGCAGGTATTCTATGAGCGCTCATGAGCACCAGGGCAT
GGCCGGGGGCCTGGAAAGAGCCACGAGGCCTAATGTCCTAGTTAGTCAAACCAATGAATT
ATCGAGCAGGGGCCTTTTGAACAAAAGCATTGGGTCCCTCATAGAAAACCCCCACTGGGG
CCCATGGGAAAGGAAATCAAGCGGCACAGCCCCCGAAATGAAACAGATCAACTTGGCTGA
CTATCCAATCCCCAGAAAGTTTGAGATCGAGCCTCAGTCATCAGCCCATGAGCCCGGGGG
TTCCCTCTATGAGAGGAGATCCGTGATCTGTGACATTTCTCCAATAAGACAGATTGTCAG
GGACCCAGGGGCTCACTCACTGGCCCACATGGGTGCCGACACCAGACTTGGGAGGAATGA
ACGTCTCAATCCAAGTTTAAGTCAGTCAGTCATTCTTCCAGGTGGGCTGGTGTCCATGGA
AACAAAGCTGAAGTCCCAGAGTGGGCAGATAAAAGAGGAAGACTTCGAACAGCCCAAATT
GCAAGCTAGCGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               241-680, + strand, RNAz p=0.965874

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               241-680, + strand, RNAz p=0.965874

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               567-657, + strand, RNAmicro p=0.998739

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               567-657, + strand, RNAmicro p=0.998739

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-729, gnl|bosTau2|chr5 (68618811-68618083)
               

               
               1-729, gnl|Hg17|chr22 (40933716-40932988)
               

               
               1-729, gnl|Mm7|chr15 (82939465-82938737)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-729, gnl|bosTau2|chr5 (68618811-68618083)
               

               
               1-729, gnl|Hg17|chr22 (40933716-40932988)
               

               
               1-729, gnl|Mm7|chr15 (82939465-82938737)

	1-729, gnl\|bosTau2\|chr5 (68618811-68618083)
	1-729, gnl\|Hg17\|chr22 (40933716-40932988)
	1-729, gnl\|Mm7\|chr15 (82939465-82938737)