Non-Coding RNA Search

Ss1.1-Pig3-SRG8010J24.5

Sequence:


               
               GAGGAGATTCAGGGGGCATCACATGTGATCCCTGGTGTCCCCACACTCCAGGAAGCCCTT
CCTTGGTCTCGTCCCCAAAGAGGAGTCAACTCCAAAGACTACGTTGGGAGGGCGGGGTGG
GGGGTGAGCAGTTCAGCTAATCCCATCGTGGTCCCTCCCGCCGGTGGTGGAACCAGGCTG
CCTTCTGATCCTTGGAAGAATGTAAAAACACAAATCCCCGAGGGGCCCCGGCAGGCTCAG
GCAGCGGGGCTCTGGGGGCAATGGCAAGGACTTCAGTGGCACCTCTCAGATCAAGGCGCC
CGTCTGCCCCGGGAATGCCCTCCCTCGCTCAGGACTGCCTGCCTCATCCCCTCTCACCCT
CACCCCTGCTCTGCTCTGTGCCAGGAGAACAGTGGGGAAGCCCCGGCCGAGGCAGCCTCC
GAGAGCCCCATGCCCACCCTGGCCAGATCCACCTCCAGTGACACCAGTGAGGAGCTCAAT
TCCCAAGACAGCCCCAAGAAAGAGGACACGGCAGCCTCATCTACCTCCTCCTCCTCCGAG
GGGGGCCTGGACTTCAACATCTCCCTGGCCGTGGCCAAAGAGAGGGCCCATCAGAAGCGC
AGCAGCAAACGGGCCCCGCAGATGGACTGGAGCAAGAAAAACGAACTCTTCATCAACCTT
TGAGCGCCCCCTGGCACCAGCCACCATGAAAGCTGGCAGGGCCAGGCCCGCAGCGCCACA
CCCCATCTTATCTCCTCCTTCCCACTCACCCCCGAATCGACATACCGATCAGCACCAGCA
CCCCTTCTTGGCAAATCTGATTTTTCTAGAGAATTATGTTCTTCCCCTAACTTGCGGGAA
GGTGACCCCTTCTCCCCCCCACCGGGTGCTTCATCCTACCATGTGTTCCCTGGCCACCGT
CTGGGGACATCTCTGGGACCTACGCCGAACAAGGAGCATGGGATTGGGCGAGAGGTCACC
CTCCCTCACGACCCCAAGTGGTGACTGGGTCCGGGATTGATCAAGGACTCATCAACTTCT
CGAGTGGACAGGGGGGCATCGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGAGATTCAGGGGGCATCACATGTGATCCCTGGTGTCCCCACACTCCAGGAAGCCCTT
CCTTGGTCTCGTCCCCAAAGAGGAGTCAACTCCAAAGACTACGTTGGGAGGGCGGGGTGG
GGGGTGAGCAGTTCAGCTAATCCCATCGTGGTCCCTCCCGCCGGTGGTGGAACCAGGCTG
CCTTCTGATCCTTGGAAGAATGTAAAAACACAAATCCCCGAGGGGCCCCGGCAGGCTCAG
GCAGCGGGGCTCTGGGGGCAATGGCAAGGACTTCAGTGGCACCTCTCAGATCAAGGCGCC
CGTCTGCCCCGGGAATGCCCTCCCTCGCTCAGGACTGCCTGCCTCATCCCCTCTCACCCT
CACCCCTGCTCTGCTCTGTGCCAGGAGAACAGTGGGGAAGCCCCGGCCGAGGCAGCCTCC
GAGAGCCCCATGCCCACCCTGGCCAGATCCACCTCCAGTGACACCAGTGAGGAGCTCAAT
TCCCAAGACAGCCCCAAGAAAGAGGACACGGCAGCCTCATCTACCTCCTCCTCCTCCGAG
GGGGGCCTGGACTTCAACATCTCCCTGGCCGTGGCCAAAGAGAGGGCCCATCAGAAGCGC
AGCAGCAAACGGGCCCCGCAGATGGACTGGAGCAAGAAAAACGAACTCTTCATCAACCTT
TGAGCGCCCCCTGGCACCAGCCACCATGAAAGCTGGCAGGGCCAGGCCCGCAGCGCCACA
CCCCATCTTATCTCCTCCTTCCCACTCACCCCCGAATCGACATACCGATCAGCACCAGCA
CCCCTTCTTGGCAAATCTGATTTTTCTAGAGAATTATGTTCTTCCCCTAACTTGCGGGAA
GGTGACCCCTTCTCCCCCCCACCGGGTGCTTCATCCTACCATGTGTTCCCTGGCCACCGT
CTGGGGACATCTCTGGGACCTACGCCGAACAAGGAGCATGGGATTGGGCGAGAGGTCACC
CTCCCTCACGACCCCAAGTGGTGACTGGGTCCGGGATTGATCAAGGACTCATCAACTTCT
CGAGTGGACAGGGGGGCATCGTCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61814873|ref|XP_608571.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61814873|ref|XP_608571.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               259-374, - strand, RNAz p=0.683849

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               259-374, - strand, RNAz p=0.683849

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               39-474, gnl|bosTau2|chr19 (51904427-51904017)
               

               
               39-474, gnl|Hg17|chr17 (70275530-70275970)
               

               
               39-474, gnl|Mm7|chr11 (115288791-115289141)
               


               
               864-1034, gnl|bosTau2|chr19 (51903405-51903235)
               

               
               864-1034, gnl|canFam2|chr9 (8661315-8660906)
               

               
               864-1034, gnl|dasNov1|scaffold_168030 (663-1102)
               

               
               864-1034, gnl|hg17|chr17 (70276548-70276988)
               

               
               864-1034, gnl|Hg17|chr17 (70276619-70276803)
               

               
               864-1034, gnl|loxAfr1|scaffold_9733 (575-1028)
               

               
               864-1034, gnl|mm7|chr11 (115289718-115290129)
               

               
               864-1034, gnl|Mm7|chr11 (115289762-115289945)
               

               
               864-1034, gnl|monDom2|scaffold_18 (31886690-31887155)
               

               
               864-1034, gnl|oryCun1|scaffold_113338 (540-932)
               

               
               864-1034, gnl|panTro1|chr19 (73622080-73622523)
               

               
               864-1034, gnl|rheMac2|chr16 (70041714-70042150)
               

               
               864-1034, gnl|rn3|chr10 (105269065-105269472)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-474, gnl|bosTau2|chr19 (51904427-51904017)
               

               
               39-474, gnl|Hg17|chr17 (70275530-70275970)
               

               
               39-474, gnl|Mm7|chr11 (115288791-115289141)
               


               
               864-1034, gnl|bosTau2|chr19 (51903405-51903235)
               

               
               864-1034, gnl|canFam2|chr9 (8661315-8660906)
               

               
               864-1034, gnl|dasNov1|scaffold_168030 (663-1102)
               

               
               864-1034, gnl|hg17|chr17 (70276548-70276988)
               

               
               864-1034, gnl|Hg17|chr17 (70276619-70276803)
               

               
               864-1034, gnl|loxAfr1|scaffold_9733 (575-1028)
               

               
               864-1034, gnl|mm7|chr11 (115289718-115290129)
               

               
               864-1034, gnl|Mm7|chr11 (115289762-115289945)
               

               
               864-1034, gnl|monDom2|scaffold_18 (31886690-31887155)
               

               
               864-1034, gnl|oryCun1|scaffold_113338 (540-932)
               

               
               864-1034, gnl|panTro1|chr19 (73622080-73622523)
               

               
               864-1034, gnl|rheMac2|chr16 (70041714-70042150)
               

               
               864-1034, gnl|rn3|chr10 (105269065-105269472)

	39-474, gnl\|bosTau2\|chr19 (51904427-51904017)
	39-474, gnl\|Hg17\|chr17 (70275530-70275970)
	39-474, gnl\|Mm7\|chr11 (115288791-115289141)

	864-1034, gnl\|bosTau2\|chr19 (51903405-51903235)
	864-1034, gnl\|canFam2\|chr9 (8661315-8660906)
	864-1034, gnl\|dasNov1\|scaffold_168030 (663-1102)
	864-1034, gnl\|hg17\|chr17 (70276548-70276988)
	864-1034, gnl\|Hg17\|chr17 (70276619-70276803)
	864-1034, gnl\|loxAfr1\|scaffold_9733 (575-1028)
	864-1034, gnl\|mm7\|chr11 (115289718-115290129)
	864-1034, gnl\|Mm7\|chr11 (115289762-115289945)
	864-1034, gnl\|monDom2\|scaffold_18 (31886690-31887155)
	864-1034, gnl\|oryCun1\|scaffold_113338 (540-932)
	864-1034, gnl\|panTro1\|chr19 (73622080-73622523)
	864-1034, gnl\|rheMac2\|chr16 (70041714-70042150)
	864-1034, gnl\|rn3\|chr10 (105269065-105269472)