Non-Coding RNA Search

Ss1.1-Pig3-SRG8010M19.5

Sequence:


               
               GTCTCCATGGAGCTACAGGGCTGGGCTGTTCAGGGGTGGGGGAAGCAAGGAGTCAGCAGA
GAGGAGTTGAGGAACCCTCCCCACTGTTCTTGCCTTCCTGCTGCTATCGTCACCTGACCT
TCGGATGGCCCACGTAGCCAGCTAGAAGCCCCAAGAACCCTCTGAGACTGAGCTGACTCC
AGGCCAGCCCCCTGCCCACCCCCTCCCACCCCCAACGTGGACACCAGGATGCTTGCCGCC
TTTGGAGGAGCCGGGAGCTGGGGGGATCGCACTTGGCGGCGAGAGATGACACTGACCACC
AGCAGTTTTTTACAGTGGCTTTATTGAGATACAGTTCACATACCATACAATCCACCCACT
TCAAGTGTCCAATTCCGTGGTTTTTAGGATATTCACAGAGTTGTGCAGTCATCACCATGG
TTAAATCTAGAAAATTTCATCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTCCATGGAGCTACAGGGCTGGGCTGTTCAGGGGTGGGGGAAGCAAGGAGTCAGCAGA
GAGGAGTTGAGGAACCCTCCCCACTGTTCTTGCCTTCCTGCTGCTATCGTCACCTGACCT
TCGGATGGCCCACGTAGCCAGCTAGAAGCCCCAAGAACCCTCTGAGACTGAGCTGACTCC
AGGCCAGCCCCCTGCCCACCCCCTCCCACCCCCAACGTGGACACCAGGATGCTTGCCGCC
TTTGGAGGAGCCGGGAGCTGGGGGGATCGCACTTGGCGGCGAGAGATGACACTGACCACC
AGCAGTTTTTTACAGTGGCTTTATTGAGATACAGTTCACATACCATACAATCCACCCACT
TCAAGTGTCCAATTCCGTGGTTTTTAGGATATTCACAGAGTTGTGCAGTCATCACCATGG
TTAAATCTAGAAAATTTCATCATC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               38-197, - strand, RNAz p=0.997248

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-197, - strand, RNAz p=0.997248

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               39-194, - strand, RNAmicro p=0.994597

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               39-194, - strand, RNAmicro p=0.994597

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-444, gnl|bosTau2|chr29 (42139544-42139101)
               

               
               1-444, gnl|canFam2|chr18 (52470954-52470554)
               

               
               1-444, gnl|hg17|chr11 (67965423-67965795)
               

               
               1-444, gnl|Hg17|chr11 (67965516-67965905)
               

               
               1-444, gnl|panTro1|chr9 (69013516-69013888)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-444, gnl|bosTau2|chr29 (42139544-42139101)
               

               
               1-444, gnl|canFam2|chr18 (52470954-52470554)
               

               
               1-444, gnl|hg17|chr11 (67965423-67965795)
               

               
               1-444, gnl|Hg17|chr11 (67965516-67965905)
               

               
               1-444, gnl|panTro1|chr9 (69013516-69013888)

	1-444, gnl\|bosTau2\|chr29 (42139544-42139101)
	1-444, gnl\|canFam2\|chr18 (52470954-52470554)
	1-444, gnl\|hg17\|chr11 (67965423-67965795)
	1-444, gnl\|Hg17\|chr11 (67965516-67965905)
	1-444, gnl\|panTro1\|chr9 (69013516-69013888)