Non-Coding RNA Search

Ss1.1-Pig3-SRG8011B02.5

Sequence:


               
               CTTCGTCCCAATGCTCCATATACACCACCAATCCCATTGTACCACAGCGGGAACTCCTAA
ATGGCCCTTCTGACCAAAGGATGCAATCAGGAGGGTGGTGAGGAGGATGACCATCCATGA
ATGTCACCCGGCCCATGGAAGAAGAACCAGAGTCAACCTGCAGACATTTGGATCTTGGGA
ACCAGGTCCCTAAGAACAATGATGGTCAGATTCTGGGGTGCAATGCTTGAAAAGAGAATC
ATCCTATCCCCATCTCCTGGAAGTGAGCTGCAGCTGGCTTGGAGGTCTTCCAGCCTTGCA
GCTAAGAAAAGTGTCAGCCATGGGGGTGGTAGCCCCTTTGTGCAGAGCATGGCAGAGGGT
TGAGGGGATGTCAAGACAACATGTCAAACCCACCAAGGAGGCTTTGTGACCCCAATGATA
TTTTTCACAGAACTGGTGGATTTTCAATGTAACCACAACGACATCCGCCCTGCAGCAGAC
AGGAGAACAGATGCAGTTGTGCAAGTTCTGGGGATGCTCTTTGCTGTCTGGACAGGTGTG
CATAGTTCTGCCAGGTAAGCTCCCACACTCTGCTACACTGTGGCATTCACATGGAGCAGC
ATGAAGAAATGGGAACAGCAGCACGCTGTCAAATAAGCTTCTTATTAAATTTTTTTCTTT
TTTGTTCTTTTTTTGCCTGAAGCA------------------------------------
------------------------------------------------------------
------------CTCTTATTTTTATTCATTTTTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCGTCCCAATGCTCCATATACACCACCAATCCCATTGTACCACAGCGGGAACTCCTAA
ATGGCCCTTCTGACCAAAGGATGCAATCAGGAGGGTGGTGAGGAGGATGACCATCCATGA
ATGTCACCCGGCCCATGGAAGAAGAACCAGAGTCAACCTGCAGACATTTGGATCTTGGGA
ACCAGGTCCCTAAGAACAATGATGGTCAGATTCTGGGGTGCAATGCTTGAAAAGAGAATC
ATCCTATCCCCATCTCCTGGAAGTGAGCTGCAGCTGGCTTGGAGGTCTTCCAGCCTTGCA
GCTAAGAAAAGTGTCAGCCATGGGGGTGGTAGCCCCTTTGTGCAGAGCATGGCAGAGGGT
TGAGGGGATGTCAAGACAACATGTCAAACCCACCAAGGAGGCTTTGTGACCCCAATGATA
TTTTTCACAGAACTGGTGGATTTTCAATGTAACCACAACGACATCCGCCCTGCAGCAGAC
AGGAGAACAGATGCAGTTGTGCAAGTTCTGGGGATGCTCTTTGCTGTCTGGACAGGTGTG
CATAGTTCTGCCAGGTAAGCTCCCACACTCTGCTACACTGTGGCATTCACATGGAGCAGC
ATGAAGAAATGGGAACAGCAGCACGCTGTCAAATAAGCTTCTTATTAAATTTTTTTCTTT
TTTGTTCTTTTTTTGCCTGAAGCA------------------------------------
------------------------------------------------------------
------------CTCTTATTTTTATTCATTTTTTGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               356-550, + strand, RNAz p=0.987316

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               356-550, + strand, RNAz p=0.987316

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               364-464, - strand, RNAmicro p=0.999344
               

               
               468-605, - strand, RNAmicro p=0.901861

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               364-464, - strand, RNAmicro p=0.999344
               

               
               468-605, - strand, RNAmicro p=0.901861

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               59-627, gnl|bosTau2|chr11 (35481614-35482193)
               

               
               59-627, gnl|Hg17|chr2 (86932386-86932967)
               

               
               59-627, gnl|Mm7|chr6 (71387916-71387365)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               59-627, gnl|bosTau2|chr11 (35481614-35482193)
               

               
               59-627, gnl|Hg17|chr2 (86932386-86932967)
               

               
               59-627, gnl|Mm7|chr6 (71387916-71387365)

	364-464, - strand, RNAmicro p=0.999344
	468-605, - strand, RNAmicro p=0.901861

	59-627, gnl\|bosTau2\|chr11 (35481614-35482193)
	59-627, gnl\|Hg17\|chr2 (86932386-86932967)
	59-627, gnl\|Mm7\|chr6 (71387916-71387365)