Non-Coding RNA Search

Ss1.1-Pig3-SRG8011B15.5

Sequence:


               
               GGAGCGCGGCGGGGCCAGACTGTGATCACGTCGGGCGGGCTCCCGGGTCTCTCCTCTCCA
GCTCCGAGCGTCCCGGGGCCGCCGTGCGCCATGCGCCCCCAGGGCCCCGCCGCCTCCCCG
CGGCGGCTCCTCGGCCTCCTGCTGCTCCTGCTGCTGCATCTGCGGGCGCCGTCGAGCGCC
TCCGACACCCCCAAAGGGAAGCAAAAGGCTCTGCTCCGGCAGAGGGAGGTGGTGGACCTG
TACAATGGCGTATGCTTACAAGGGCCTGCGGGGGTGCCTGGGCGAGACGGGAGCCCCGGG
GCCAATGGCATCCCTGGTACCCCTGGGATCCCAGGTCGAGATGGATTCAAAGGAGAGAAG
GGGGAATGCCTGAGGGAAGTCTTCGAGGAGTCCTGGACGCCTAACTACAAGCAGTGTTCA
TGGAGTTCCCTGAATTATGGCATAGATCTTGGAAAAATTGCTGAATGTACATTCACAAAG
ATGCGTTCAAACAGTGCCCTAAGAGTTTTGTTCAGCGGCTCACTTCGGTTAAAATGCAGA
AGTGCATGCTGTCAGCGTTGGTATTTCACGTTCAATGGAGCTGAGTGTTCAGGACCTCTT
CCTATTGAAGCCATAATTTATTTGGACCAAGGAAGCCCTGAATTGAATTCAACAATTAAT
ATTCATCGCACTTCTTCTGTGGAAGGACTCTGTGAAGGCATTGGTGCTGGCATGGTGGAC
ATTGCTATATGGGTTGGTACTTGCTCAGATTACCCGAAAGGAGATGCCTCCACAGGGTGG
AATTCGGTGTCTCGTATCATTATTGAAGAGCTCCCAAAATAAATCCTTTCATTTTTGTTC
CCTACCTCTTTTTTATTATACCTTTGAATGGTTCGTTTTAGTGACACCTTATATAATTTT
TATGTGTACATTGTTGTTGTTCAGTGGATAAGTCATGTCCAACTCTTTGCCACCCCCTGG
ACTGCAGCACTCCAGACTTCCCTGTCTTTATTATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCGCGGCGGGGCCAGACTGTGATCACGTCGGGCGGGCTCCCGGGTCTCTCCTCTCCA
GCTCCGAGCGTCCCGGGGCCGCCGTGCGCCATGCGCCCCCAGGGCCCCGCCGCCTCCCCG
CGGCGGCTCCTCGGCCTCCTGCTGCTCCTGCTGCTGCATCTGCGGGCGCCGTCGAGCGCC
TCCGACACCCCCAAAGGGAAGCAAAAGGCTCTGCTCCGGCAGAGGGAGGTGGTGGACCTG
TACAATGGCGTATGCTTACAAGGGCCTGCGGGGGTGCCTGGGCGAGACGGGAGCCCCGGG
GCCAATGGCATCCCTGGTACCCCTGGGATCCCAGGTCGAGATGGATTCAAAGGAGAGAAG
GGGGAATGCCTGAGGGAAGTCTTCGAGGAGTCCTGGACGCCTAACTACAAGCAGTGTTCA
TGGAGTTCCCTGAATTATGGCATAGATCTTGGAAAAATTGCTGAATGTACATTCACAAAG
ATGCGTTCAAACAGTGCCCTAAGAGTTTTGTTCAGCGGCTCACTTCGGTTAAAATGCAGA
AGTGCATGCTGTCAGCGTTGGTATTTCACGTTCAATGGAGCTGAGTGTTCAGGACCTCTT
CCTATTGAAGCCATAATTTATTTGGACCAAGGAAGCCCTGAATTGAATTCAACAATTAAT
ATTCATCGCACTTCTTCTGTGGAAGGACTCTGTGAAGGCATTGGTGCTGGCATGGTGGAC
ATTGCTATATGGGTTGGTACTTGCTCAGATTACCCGAAAGGAGATGCCTCCACAGGGTGG
AATTCGGTGTCTCGTATCATTATTGAAGAGCTCCCAAAATAAATCCTTTCATTTTTGTTC
CCTACCTCTTTTTTATTATACCTTTGAATGGTTCGTTTTAGTGACACCTTATATAATTTT
TATGTGTACATTGTTGTTGTTCAGTGGATAAGTCATGTCCAACTCTTTGCCACCCCCTGG
ACTGCAGCACTCCAGACTTCCCTGTCTTTATTATAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61850803|ref|XP_581664.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61850803|ref|XP_581664.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               663-901, + strand, RNAz p=0.9939

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               663-901, + strand, RNAz p=0.9939

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-240, gnl|bosTau2|chr14 (36242848-36243087)
               

               
               1-240, gnl|Hg17|chr8 (104452975-104453210)
               

               
               1-240, gnl|Mm7|chr15 (39082252-39082488)
               


               
               663-994, gnl|bosTau2|chr14 (36257431-36257763)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-240, gnl|bosTau2|chr14 (36242848-36243087)
               

               
               1-240, gnl|Hg17|chr8 (104452975-104453210)
               

               
               1-240, gnl|Mm7|chr15 (39082252-39082488)
               


               
               663-994, gnl|bosTau2|chr14 (36257431-36257763)

	1-240, gnl\|bosTau2\|chr14 (36242848-36243087)
	1-240, gnl\|Hg17\|chr8 (104452975-104453210)
	1-240, gnl\|Mm7\|chr15 (39082252-39082488)

	663-994, gnl\|bosTau2\|chr14 (36257431-36257763)