Non-Coding RNA Search

Ss1.1-Pig3-SRG8011B18.5

Sequence:


               
               ACTCATGCCACCTGGAAACTAGTTTGGTTTCAAAACAAAGTTGTTGCAGCATGCCTGTCT
TAAAGGGCATTTCCAGTAGACCAGTTTCTGTGTATCCTGCTTCTCTCAAGTGTGTTTAAC
TTTGCGTGTAATGACTACTAAAAAGGTCTTTCACGTTCGTGCCTAACCGTACATCTAGCA
GGTTTTCTGATACCTATGACTGAACGTCAGCGTGTGTCAGACTGACTGGCACCCAGTTTT
AATCTGCACGTTCATTTTTGTAGACATTTATCATCTCATCTGAAGCAGACACTGTGCTTA
TAACAGTGGTGTCATAAAGATGGATGGTGCCAGCCTTCATGGAGTTGATGAGCTGGAGGA
TGAGATGGAATTTATATATAAATAACTCCGATGAAGGAAGGAAATGGTAAATGTGATAGA
GGTGAACAAGAAAAAACTGCAAAATCTCAGGATTGATGGAGATGTGGAAAAAAGCTGAAA
AATTAAGCTAAATGGTCGATCAAATTTAGAACGGCAAAGATGGGGTTAAGGGCATAAAGT
GGCAAGTGTTGGATAACCCCCAGTTGTCCCTGACCTTTTAAATGCTGACAGCAAGCGAGC
AGAGAATATGAGCTGCTGGTTTTGTTTGTTTGTTTGTTTTTCCAGTTTGTTTATTTTATC
TAATGAGACGGTTAACATCTGGAGCCATTTGCTGGGCTTCTTTCTCTTCTTCACACTGGG
AATCTACGACATGACTCTCTGTGTTACCGTCGGCAAGTGCTTCCAGAGAAGATTTTGTAA
TTTGTTCTATTTGTCTTTTCTGCTTCCAGGTAAGTCATTTCGCAAACACTTTTATGGCTG
AGGAGAGCTTTAGTCCGCAAGCTCGGGCAGGGACCTTACTGCACACCCACTGCTTGTTTT
CAAGAGCCCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCATGCCACCTGGAAACTAGTTTGGTTTCAAAACAAAGTTGTTGCAGCATGCCTGTCT
TAAAGGGCATTTCCAGTAGACCAGTTTCTGTGTATCCTGCTTCTCTCAAGTGTGTTTAAC
TTTGCGTGTAATGACTACTAAAAAGGTCTTTCACGTTCGTGCCTAACCGTACATCTAGCA
GGTTTTCTGATACCTATGACTGAACGTCAGCGTGTGTCAGACTGACTGGCACCCAGTTTT
AATCTGCACGTTCATTTTTGTAGACATTTATCATCTCATCTGAAGCAGACACTGTGCTTA
TAACAGTGGTGTCATAAAGATGGATGGTGCCAGCCTTCATGGAGTTGATGAGCTGGAGGA
TGAGATGGAATTTATATATAAATAACTCCGATGAAGGAAGGAAATGGTAAATGTGATAGA
GGTGAACAAGAAAAAACTGCAAAATCTCAGGATTGATGGAGATGTGGAAAAAAGCTGAAA
AATTAAGCTAAATGGTCGATCAAATTTAGAACGGCAAAGATGGGGTTAAGGGCATAAAGT
GGCAAGTGTTGGATAACCCCCAGTTGTCCCTGACCTTTTAAATGCTGACAGCAAGCGAGC
AGAGAATATGAGCTGCTGGTTTTGTTTGTTTGTTTGTTTTTCCAGTTTGTTTATTTTATC
TAATGAGACGGTTAACATCTGGAGCCATTTGCTGGGCTTCTTTCTCTTCTTCACACTGGG
AATCTACGACATGACTCTCTGTGTTACCGTCGGCAAGTGCTTCCAGAGAAGATTTTGTAA
TTTGTTCTATTTGTCTTTTCTGCTTCCAGGTAAGTCATTTCGCAAACACTTTTATGGCTG
AGGAGAGCTTTAGTCCGCAAGCTCGGGCAGGGACCTTACTGCACACCCACTGCTTGTTTT
CAAGAGCCCCAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               251-410, + strand, RNAz p=0.897332

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               251-410, + strand, RNAz p=0.897332

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-125, gnl|bosTau2|chr6 (51945419-51945552)
               

               
               1-125, gnl|Hg17|chr4 (80214262-80214129)
               

               
               1-125, gnl|Mm7|chr5 (96322194-96322058)
               


               
               176-912, gnl|bosTau2|chr6 (51945830-51946565)
               

               
               176-912, gnl|Hg17|chr4 (80214078-80213348)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-125, gnl|bosTau2|chr6 (51945419-51945552)
               

               
               1-125, gnl|Hg17|chr4 (80214262-80214129)
               

               
               1-125, gnl|Mm7|chr5 (96322194-96322058)
               


               
               176-912, gnl|bosTau2|chr6 (51945830-51946565)
               

               
               176-912, gnl|Hg17|chr4 (80214078-80213348)

	1-125, gnl\|bosTau2\|chr6 (51945419-51945552)
	1-125, gnl\|Hg17\|chr4 (80214262-80214129)
	1-125, gnl\|Mm7\|chr5 (96322194-96322058)

	176-912, gnl\|bosTau2\|chr6 (51945830-51946565)
	176-912, gnl\|Hg17\|chr4 (80214078-80213348)