Ss1.1-Pig3-SRG8011C06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGAATGCTAGACAATAGGAAACTTGGAGAACTTCCAGAAATTAATGGCAAGTTGGTGAAG AGTATATTCCGTGTAGTGTTCCATGACAGACGACTGCAGTACACTGAACACCATCAGCTG GAGGGCTGGCGGTGGAACCGACCCGGAGATAGAATTCTTGACATAGATATCCCAATGTCT GTGGGTATAATCGACCCTAGGGCTAATCCCAACCAACTAAATACAGTGGAATTCCTCTGG GACCCTGCAAAGAGGACATCTGTGTTTATTCAAGTGCATTGTATTAGCACAGAGTTTACT ATGAGGAAACACGGTGGAGAGAAAGGTGTGCCATTTCGAGTACAAATCGACACCTTCAAG GAGAATGAGAACGGGGAGTACACTGAACACCTGCACTCATCCAGCTGCCAGATCAAAGTC TTCAAGCCCAAAGGTGCAGATAGAAAGCAAAAAACAGACAGGGAGAAAATGGAGAAACGA ACACCTCACGATAAGGAGAAATACCAACCGTCCTATGAGACGACGATACTCACAGAGTGT TCTCCATGGCCCGAGATCACGTATGTCAATAATTCCCCATCACCTGGGTTCAACAGTTCC CACAGCAGTTTTCCTCTTGGAGAAGGGTAAGTTGCGGAATGAAATTGGCTTGTGTTTGTC CTAATTATGTATTCTTTCATTATCTCTCCATAAACAAAATTTTTCCAAGTCAATAAGTCC TTTTATTTGGTCAGTCTTTGATGGATTTATGTATTAACTGAGGTTTGGATTATCTTCAGC GGAGACTAAAAAGAGTGTTTTTTGTAGCTTTCGTTCTCCCTGTTAGAAGATAGCATTTAT GGTTAGCATTTAGGGATCCAGGGACCGATTTTCTGGGTTTTTCACTTCTCCCTCTTATAG CTTATCTTAGGGTCATTTTACTTCCTGATCATACTTTCACCAGAGAGTGTCACTGGGAGT TGAAACACAGTTGTATAAACACTAAAATCTGTTTGGGAGTTCTCTTGTGGCACAGCAGGT TGTCGCTGCTGTGGCGTGGGTTTGATCCCTGGCCCGGGAACTTCTACACATCTCCAATGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGAATGCTAGACAATAGGAAACTTGGAGAACTTCCAGAAATTAATGGCAAGTTGGTGAAG AGTATATTCCGTGTAGTGTTCCATGACAGACGACTGCAGTACACTGAACACCATCAGCTG GAGGGCTGGCGGTGGAACCGACCCGGAGATAGAATTCTTGACATAGATATCCCAATGTCT GTGGGTATAATCGACCCTAGGGCTAATCCCAACCAACTAAATACAGTGGAATTCCTCTGG GACCCTGCAAAGAGGACATCTGTGTTTATTCAAGTGCATTGTATTAGCACAGAGTTTACT ATGAGGAAACACGGTGGAGAGAAAGGTGTGCCATTTCGAGTACAAATCGACACCTTCAAG GAGAATGAGAACGGGGAGTACACTGAACACCTGCACTCATCCAGCTGCCAGATCAAAGTC TTCAAGCCCAAAGGTGCAGATAGAAAGCAAAAAACAGACAGGGAGAAAATGGAGAAACGA ACACCTCACGATAAGGAGAAATACCAACCGTCCTATGAGACGACGATACTCACAGAGTGT TCTCCATGGCCCGAGATCACGTATGTCAATAATTCCCCATCACCTGGGTTCAACAGTTCC CACAGCAGTTTTCCTCTTGGAGAAGGGTAAGTTGCGGAATGAAATTGGCTTGTGTTTGTC CTAATTATGTATTCTTTCATTATCTCTCCATAAACAAAATTTTTCCAAGTCAATAAGTCC TTTTATTTGGTCAGTCTTTGATGGATTTATGTATTAACTGAGGTTTGGATTATCTTCAGC GGAGACTAAAAAGAGTGTTTTTTGTAGCTTTCGTTCTCCCTGTTAGAAGATAGCATTTAT GGTTAGCATTTAGGGATCCAGGGACCGATTTTCTGGGTTTTTCACTTCTCCCTCTTATAG CTTATCTTAGGGTCATTTTACTTCCTGATCATACTTTCACCAGAGAGTGTCACTGGGAGT TGAAACACAGTTGTATAAACACTAAAATCTGTTTGGGAGTTCTCTTGTGGCACAGCAGGT TGTCGCTGCTGTGGCGTGGGTTTGATCCCTGGCCCGGGAACTTCTACACATCTCCAATGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 269-387, + strand, RNAz p=0.651557 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 269-387, + strand, RNAz p=0.651557 |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 59-169, gnl|bosTau2|chr5 (20807460-20807570) | |
| 59-169, gnl|canFam2|chr27 (6726648-6726511) | |
| 59-169, gnl|danRer3|chrNA (172977-172849) | |
| 59-169, gnl|dasNov1|scaffold_11050 (51057-51194) | |
| 59-169, gnl|echTel1|scaffold_322919 (50596-50466) | |
| 59-169, gnl|fr1|chrUn (277654924-277655058) | |
| 59-169, gnl|galGal2|chrUn (44669795-44669672) | |
| 59-169, gnl|hg17|chr12 (49796350-49796487) | |
| 59-169, gnl|Hg17|chr12 (49796472-49796362) | |
| 59-169, gnl|loxAfr1|scaffold_32103 (17976-18113) | |
| 59-169, gnl|mm7|chr15 (100510797-100510932) | |
| 59-169, gnl|Mm7|chr15 (100510919-100510809) | |
| 59-169, gnl|monDom2|scaffold_2 (7362435-7362310) | |
| 59-169, gnl|oryCun1|scaffold_145349 (9241-9103) | |
| 59-169, gnl|panTro1|chr10 (51015351-51015488) | |
| 59-169, gnl|rheMac2|chr11 (48265384-48265521) | |
| 59-169, gnl|rn3|chr7 (139353272-139353402) | |
| 59-169, gnl|tetNig1|chr9 (8701128-8701245) | |
| 59-169, gnl|xenTro1|scaffold_34 (1704490-1704372) | |
| 269-426, gnl|bosTau2|chr5 (20810533-20810690) | |
| 269-426, gnl|canFam2|chr27 (6732128-6731924) | |
| 269-426, gnl|danRer3|chrNA (176025-175830) | |
| 269-426, gnl|dasNov1|scaffold_11050 (47597-47802) | |
| 269-426, gnl|echTel1|scaffold_323128 (81179-81343) | |
| 269-426, gnl|fr1|chrUn (277654386-277654547) | |
| 269-426, gnl|galGal2|chrUn (44670644-44670467) | |
| 269-426, gnl|hg17|chr12 (49789143-49789347) | |
| 269-426, gnl|Hg17|chr12 (49789328-49789171) | |
| 269-426, gnl|loxAfr1|scaffold_32103 (14347-14548) | |
| 269-426, gnl|mm7|chr15 (100505781-100505982) | |
| 269-426, gnl|Mm7|chr15 (100505965-100505808) | |
| 269-426, gnl|monDom2|scaffold_2 (7363894-7363710) | |
| 269-426, gnl|oryCun1|scaffold_145349 (19732-19532) | |
| 269-426, gnl|panTro1|chr10 (51008082-51008286) | |
| 269-426, gnl|rheMac2|chr11 (48257365-48257566) | |
| 269-426, gnl|rn3|chr7 (139348005-139348157) | |
| 269-426, gnl|tetNig1|chr9 (8700654-8700816) | |
| 269-426, gnl|xenTro1|scaffold_34 (1706511-1706318) | |
| 536-812, gnl|bosTau2|chr5 (20813195-20813475) | |
| 536-812, gnl|Hg17|chr12 (49786665-49786390) | |
| 815-996, gnl|bosTau2|chr5 (20813592-20813763) | |
| 815-996, gnl|canFam2|chr27 (6734090-6733905) | |
| 815-996, gnl|echTel1|scaffold_319688 (739-924) | |
| 815-996, gnl|hg17|chr12 (49786140-49786345) | |
| 815-996, gnl|Hg17|chr12 (49786351-49786165) | |
| 815-996, gnl|loxAfr1|scaffold_32103 (10926-11130) | |
| 815-996, gnl|mm7|chr15 (100502858-100503051) | |
| 815-996, gnl|oryCun1|scaffold_193410 (196-7) | |
| 815-996, gnl|panTro1|chr10 (51004639-51004844) | |
| 815-996, gnl|rheMac2|chr11 (48254585-48254782) | |
| 815-996, gnl|rn3|chr7 (139345221-139345435) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 59-169, gnl|bosTau2|chr5 (20807460-20807570) | |
| 59-169, gnl|canFam2|chr27 (6726648-6726511) | |
| 59-169, gnl|danRer3|chrNA (172977-172849) | |
| 59-169, gnl|dasNov1|scaffold_11050 (51057-51194) | |
| 59-169, gnl|echTel1|scaffold_322919 (50596-50466) | |
| 59-169, gnl|fr1|chrUn (277654924-277655058) | |
| 59-169, gnl|galGal2|chrUn (44669795-44669672) | |
| 59-169, gnl|hg17|chr12 (49796350-49796487) | |
| 59-169, gnl|Hg17|chr12 (49796472-49796362) | |
| 59-169, gnl|loxAfr1|scaffold_32103 (17976-18113) | |
| 59-169, gnl|mm7|chr15 (100510797-100510932) | |
| 59-169, gnl|Mm7|chr15 (100510919-100510809) | |
| 59-169, gnl|monDom2|scaffold_2 (7362435-7362310) | |
| 59-169, gnl|oryCun1|scaffold_145349 (9241-9103) | |
| 59-169, gnl|panTro1|chr10 (51015351-51015488) | |
| 59-169, gnl|rheMac2|chr11 (48265384-48265521) | |
| 59-169, gnl|rn3|chr7 (139353272-139353402) | |
| 59-169, gnl|tetNig1|chr9 (8701128-8701245) | |
| 59-169, gnl|xenTro1|scaffold_34 (1704490-1704372) | |
| 269-426, gnl|bosTau2|chr5 (20810533-20810690) | |
| 269-426, gnl|canFam2|chr27 (6732128-6731924) | |
| 269-426, gnl|danRer3|chrNA (176025-175830) | |
| 269-426, gnl|dasNov1|scaffold_11050 (47597-47802) | |
| 269-426, gnl|echTel1|scaffold_323128 (81179-81343) | |
| 269-426, gnl|fr1|chrUn (277654386-277654547) | |
| 269-426, gnl|galGal2|chrUn (44670644-44670467) | |
| 269-426, gnl|hg17|chr12 (49789143-49789347) | |
| 269-426, gnl|Hg17|chr12 (49789328-49789171) | |
| 269-426, gnl|loxAfr1|scaffold_32103 (14347-14548) | |
| 269-426, gnl|mm7|chr15 (100505781-100505982) | |
| 269-426, gnl|Mm7|chr15 (100505965-100505808) | |
| 269-426, gnl|monDom2|scaffold_2 (7363894-7363710) | |
| 269-426, gnl|oryCun1|scaffold_145349 (19732-19532) | |
| 269-426, gnl|panTro1|chr10 (51008082-51008286) | |
| 269-426, gnl|rheMac2|chr11 (48257365-48257566) | |
| 269-426, gnl|rn3|chr7 (139348005-139348157) | |
| 269-426, gnl|tetNig1|chr9 (8700654-8700816) | |
| 269-426, gnl|xenTro1|scaffold_34 (1706511-1706318) | |
| 536-812, gnl|bosTau2|chr5 (20813195-20813475) | |
| 536-812, gnl|Hg17|chr12 (49786665-49786390) | |
| 815-996, gnl|bosTau2|chr5 (20813592-20813763) | |
| 815-996, gnl|canFam2|chr27 (6734090-6733905) | |
| 815-996, gnl|echTel1|scaffold_319688 (739-924) | |
| 815-996, gnl|hg17|chr12 (49786140-49786345) | |
| 815-996, gnl|Hg17|chr12 (49786351-49786165) | |
| 815-996, gnl|loxAfr1|scaffold_32103 (10926-11130) | |
| 815-996, gnl|mm7|chr15 (100502858-100503051) | |
| 815-996, gnl|oryCun1|scaffold_193410 (196-7) | |
| 815-996, gnl|panTro1|chr10 (51004639-51004844) | |
| 815-996, gnl|rheMac2|chr11 (48254585-48254782) | |
| 815-996, gnl|rn3|chr7 (139345221-139345435) |