Ss1.1-Pig3-SRG8011C12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACTTATGAGGAACTGACCGGGTGGCTGAGGGAGGTGGAAGAGGAGCTGGCAGCCAGTGG AGGACAGTCTCCCACAGGGGAGCAGATACCCCAGTTTCAGCAGAGACAGAAGGAGCTGAA GAAGGAGGTCATGGAGCACAGGCTGGTGTTGGACACGGTGAATGAGGTGAGCCATGCGCT CTTAGAGCTGGTGCCCTGGAGAGCCAGAGAAGGGCTGGATAAACTTGTGTCCGATGCCAA CGAGCAGTACAAGCTGGTCAGTGACACTGTTGGACAAAGGGTGGATGAAATTGATGCTGC TATTCAGAGATCACAACAGTATGAGCAAGCTGCTGATGCATAGCTAGCTTGGGTTGCTGA AACAAAACGGAAACTGATGGCCCTGGGTCCAATTCGCCTGGAACAGGACCAGACCACAGC TCATCTGCAGGTACAGAAAGCTTTCTCCATTGACATTATTCGACACAAAGATTCCATGGA TGAACTCTTCAGTCATCGTGGTGAAATCTTTGGCACATGTGGAGAGGAGCAAAAAGCTCT ATTACAGAAATCTTCATAAATTGAGCTACTCATCCTAAACATACAAAGCTTAAGTGCCAG TTTTGTGGAGATGTTTATCAGAGGAAAAAAGCCAAATGAAACTGGATGAGCAAATATGTC ATCATAGTCCCTGAGATATTTATTCAAGCTGATTTGTTATAATACTGCATAAATTGCAAA AGGAAAAGACAGAGTCTTTAATACAGCAATACGAAGCCATTAGTCTGCTCAATTCAGAGC GTTACGCCCGCATGGAGCGAGCACAGGTCTTGGTGAACCAGTTTTGGGAAACTTATGAGG AGCTCAGCCCCTGGATTGAGGAAACTCGGGGACTGATAGCACAGTTGCCTCCTCCGGCCA TTGATCACGAACAGCTCAGGCATCAACAGGAGGAAATGAGGCAACTAAGGGAATCCATTG CTGAACACAAACCTCATATTGATAAACTGCTAAAGATAGGCCCCCAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACTTATGAGGAACTGACCGGGTGGCTGAGGGAGGTGGAAGAGGAGCTGGCAGCCAGTGG AGGACAGTCTCCCACAGGGGAGCAGATACCCCAGTTTCAGCAGAGACAGAAGGAGCTGAA GAAGGAGGTCATGGAGCACAGGCTGGTGTTGGACACGGTGAATGAGGTGAGCCATGCGCT CTTAGAGCTGGTGCCCTGGAGAGCCAGAGAAGGGCTGGATAAACTTGTGTCCGATGCCAA CGAGCAGTACAAGCTGGTCAGTGACACTGTTGGACAAAGGGTGGATGAAATTGATGCTGC TATTCAGAGATCACAACAGTATGAGCAAGCTGCTGATGCATAGCTAGCTTGGGTTGCTGA AACAAAACGGAAACTGATGGCCCTGGGTCCAATTCGCCTGGAACAGGACCAGACCACAGC TCATCTGCAGGTACAGAAAGCTTTCTCCATTGACATTATTCGACACAAAGATTCCATGGA TGAACTCTTCAGTCATCGTGGTGAAATCTTTGGCACATGTGGAGAGGAGCAAAAAGCTCT ATTACAGAAATCTTCATAAATTGAGCTACTCATCCTAAACATACAAAGCTTAAGTGCCAG TTTTGTGGAGATGTTTATCAGAGGAAAAAAGCCAAATGAAACTGGATGAGCAAATATGTC ATCATAGTCCCTGAGATATTTATTCAAGCTGATTTGTTATAATACTGCATAAATTGCAAA AGGAAAAGACAGAGTCTTTAATACAGCAATACGAAGCCATTAGTCTGCTCAATTCAGAGC GTTACGCCCGCATGGAGCGAGCACAGGTCTTGGTGAACCAGTTTTGGGAAACTTATGAGG AGCTCAGCCCCTGGATTGAGGAAACTCGGGGACTGATAGCACAGTTGCCTCCTCCGGCCA TTGATCACGAACAGCTCAGGCATCAACAGGAGGAAATGAGGCAACTAAGGGAATCCATTG CTGAACACAAACCTCATATTGATAAACTGCTAAAGATAGGCCCCCAAC |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 111-269, - strand, RNAz p=0.916662 | |
| 743-861, - strand, RNAz p=0.511033 | |
| 760-879, + strand, RNAz p=0.794047 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 111-269, - strand, RNAz p=0.916662 | |
| 743-861, - strand, RNAz p=0.511033 | |
| 760-879, + strand, RNAz p=0.794047 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 111-319, gnl|bosTau2|chr3 (73182192-73181984) | |
| 111-319, gnl|canFam2|chr15 (6412997-6412749) | |
| 111-319, gnl|danRer3|chr19 (67756186-67755945) | |
| 111-319, gnl|dasNov1|scaffold_71816 (4315-4068) | |
| 111-319, gnl|echTel1|scaffold_300812 (87748-87511) | |
| 111-319, gnl|fr1|chrUn (83365737-83365499) | |
| 111-319, gnl|galGal2|chr23 (4843259-4843483) | |
| 111-319, gnl|hg17|chr1 (39565452-39565699) | |
| 111-319, gnl|Hg17|chr1 (39565465-39565673) | |
| 111-319, gnl|loxAfr1|scaffold_58783 (7284-7531) | |
| 111-319, gnl|mm7|chr4 (122838937-122838693) | |
| 111-319, gnl|Mm7|chr4 (122838924-122838716) | |
| 111-319, gnl|monDom2|scaffold_43 (9784716-9784480) | |
| 111-319, gnl|oryCun1|scaffold_199249 (76718-76471) | |
| 111-319, gnl|panTro1|chr1 (40446085-40446332) | |
| 111-319, gnl|rheMac2|chr1 (42303015-42303262) | |
| 111-319, gnl|rn3|chr5 (142710951-142710707) | |
| 111-319, gnl|tetNig1|chrUn_random (3297175-3296964) | |
| 111-319, gnl|xenTro1|scaffold_1043 (99802-99553) | |
| 721-941, gnl|bosTau2|chr3 (73177969-73177749) | |
| 721-941, gnl|canFam2|chr15 (6409515-6409268) | |
| 721-941, gnl|danRer3|chr19 (67753907-67753663) | |
| 721-941, gnl|dasNov1|scaffold_71816 (871-614) | |
| 721-941, gnl|echTel1|scaffold_300812 (82319-82063) | |
| 721-941, gnl|fr1|chrUn (83364972-83364743) | |
| 721-941, gnl|galGal2|chr23 (4845164-4845413) | |
| 721-941, gnl|hg17|chr1 (39569146-39569406) | |
| 721-941, gnl|Hg17|chr1 (39569177-39569397) | |
| 721-941, gnl|loxAfr1|scaffold_58783 (10600-10847) | |
| 721-941, gnl|mm7|chr4 (122834026-122833758) | |
| 721-941, gnl|Mm7|chr4 (122833985-122833765) | |
| 721-941, gnl|monDom2|scaffold_43 (9779452-9779206) | |
| 721-941, gnl|oryCun1|scaffold_199249 (73686-73433) | |
| 721-941, gnl|panTro1|chr1 (40449791-40450050) | |
| 721-941, gnl|rheMac2|chr1 (42306534-42306793) | |
| 721-941, gnl|rn3|chr5 (142705466-142705210) | |
| 721-941, gnl|tetNig1|chrUn_random (3296374-3296151) | |
| 721-941, gnl|xenTro1|scaffold_1043 (95652-95394) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 111-319, gnl|bosTau2|chr3 (73182192-73181984) | |
| 111-319, gnl|canFam2|chr15 (6412997-6412749) | |
| 111-319, gnl|danRer3|chr19 (67756186-67755945) | |
| 111-319, gnl|dasNov1|scaffold_71816 (4315-4068) | |
| 111-319, gnl|echTel1|scaffold_300812 (87748-87511) | |
| 111-319, gnl|fr1|chrUn (83365737-83365499) | |
| 111-319, gnl|galGal2|chr23 (4843259-4843483) | |
| 111-319, gnl|hg17|chr1 (39565452-39565699) | |
| 111-319, gnl|Hg17|chr1 (39565465-39565673) | |
| 111-319, gnl|loxAfr1|scaffold_58783 (7284-7531) | |
| 111-319, gnl|mm7|chr4 (122838937-122838693) | |
| 111-319, gnl|Mm7|chr4 (122838924-122838716) | |
| 111-319, gnl|monDom2|scaffold_43 (9784716-9784480) | |
| 111-319, gnl|oryCun1|scaffold_199249 (76718-76471) | |
| 111-319, gnl|panTro1|chr1 (40446085-40446332) | |
| 111-319, gnl|rheMac2|chr1 (42303015-42303262) | |
| 111-319, gnl|rn3|chr5 (142710951-142710707) | |
| 111-319, gnl|tetNig1|chrUn_random (3297175-3296964) | |
| 111-319, gnl|xenTro1|scaffold_1043 (99802-99553) | |
| 721-941, gnl|bosTau2|chr3 (73177969-73177749) | |
| 721-941, gnl|canFam2|chr15 (6409515-6409268) | |
| 721-941, gnl|danRer3|chr19 (67753907-67753663) | |
| 721-941, gnl|dasNov1|scaffold_71816 (871-614) | |
| 721-941, gnl|echTel1|scaffold_300812 (82319-82063) | |
| 721-941, gnl|fr1|chrUn (83364972-83364743) | |
| 721-941, gnl|galGal2|chr23 (4845164-4845413) | |
| 721-941, gnl|hg17|chr1 (39569146-39569406) | |
| 721-941, gnl|Hg17|chr1 (39569177-39569397) | |
| 721-941, gnl|loxAfr1|scaffold_58783 (10600-10847) | |
| 721-941, gnl|mm7|chr4 (122834026-122833758) | |
| 721-941, gnl|Mm7|chr4 (122833985-122833765) | |
| 721-941, gnl|monDom2|scaffold_43 (9779452-9779206) | |
| 721-941, gnl|oryCun1|scaffold_199249 (73686-73433) | |
| 721-941, gnl|panTro1|chr1 (40449791-40450050) | |
| 721-941, gnl|rheMac2|chr1 (42306534-42306793) | |
| 721-941, gnl|rn3|chr5 (142705466-142705210) | |
| 721-941, gnl|tetNig1|chrUn_random (3296374-3296151) | |
| 721-941, gnl|xenTro1|scaffold_1043 (95652-95394) |