Non-Coding RNA Search

Ss1.1-Pig3-SRG8011D14.5

Sequence:


               
               GAAAATTCCTGCAGAGCATAAAAAAAAATGGCATGTAGGTGTCCATTGAATACACCTCCT
TGACAGAAAGCAAAGAAATCTCCTTAAATCAGAATCTTTTCAGAAAATCTGAGATAGAGA
GTCACACCCTCTGTAAACAGAGGACCCATCGGCTGTAGTACTAGGCAGAGCCCCTCAGGT
CAAGGCTAGGAGCATCTTTTTATACGCTCTCACTTAGATATCGTTCCTTTTTTTTTTTTT
TTCCTTTTGGTCTGGGCATGTCTCTATCCCTGGCTCTCTCTGAATGCCTCTCTCTTTCTC
TGTACACACACCCACACCCACACATCCTTCTCCCATCCTTTTCCCATCTTTCAGCCAAAA
AAAAAATAAAAAATAAAAACCTTGGTGGCTCTGGATCTATAGAATTACCATTTCTGTGAT
AATCATCCTTCTTGTTGTTGGCATTTTTTTCTCCTTTTTATTGTGTGGCAAAATCTGTCT
TTGTGCCTCTGTTGAGGAAAACCCATTTACTATAAAGGCAAATCGACTTCCTCTGCAATG
AAGTTTGCCTCATTTTCACTTCTCATATCACTAATTCTATCACAGACCACCTCAAGCCTT
TTTATTTTTTAAGACTTCCTGGCCCAAAAAGTTTCCTAGGCAAATAATGGAAAGGTAGCA
ATTCCAGAATGCTATCTAATCTATTATCTTCCAACTCCAGCATCTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAATTCCTGCAGAGCATAAAAAAAAATGGCATGTAGGTGTCCATTGAATACACCTCCT
TGACAGAAAGCAAAGAAATCTCCTTAAATCAGAATCTTTTCAGAAAATCTGAGATAGAGA
GTCACACCCTCTGTAAACAGAGGACCCATCGGCTGTAGTACTAGGCAGAGCCCCTCAGGT
CAAGGCTAGGAGCATCTTTTTATACGCTCTCACTTAGATATCGTTCCTTTTTTTTTTTTT
TTCCTTTTGGTCTGGGCATGTCTCTATCCCTGGCTCTCTCTGAATGCCTCTCTCTTTCTC
TGTACACACACCCACACCCACACATCCTTCTCCCATCCTTTTCCCATCTTTCAGCCAAAA
AAAAAATAAAAAATAAAAACCTTGGTGGCTCTGGATCTATAGAATTACCATTTCTGTGAT
AATCATCCTTCTTGTTGTTGGCATTTTTTTCTCCTTTTTATTGTGTGGCAAAATCTGTCT
TTGTGCCTCTGTTGAGGAAAACCCATTTACTATAAAGGCAAATCGACTTCCTCTGCAATG
AAGTTTGCCTCATTTTCACTTCTCATATCACTAATTCTATCACAGACCACCTCAAGCCTT
TTTATTTTTTAAGACTTCCTGGCCCAAAAAGTTTCCTAGGCAAATAATGGAAAGGTAGCA
ATTCCAGAATGCTATCTAATCTATTATCTTCCAACTCCAGCATCTTGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               95-212, - strand, RNAz p=0.506669

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               95-212, - strand, RNAz p=0.506669

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               31-341, gnl|bosTau2|chr17 (10781193-10780909)
               

               
               31-341, gnl|Hg17|chr4 (142142657-142142318)
               


               
               392-705, gnl|bosTau2|chr17 (10780890-10780565)
               

               
               392-705, gnl|Hg17|chr4 (142142294-142141986)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-341, gnl|bosTau2|chr17 (10781193-10780909)
               

               
               31-341, gnl|Hg17|chr4 (142142657-142142318)
               


               
               392-705, gnl|bosTau2|chr17 (10780890-10780565)
               

               
               392-705, gnl|Hg17|chr4 (142142294-142141986)

	31-341, gnl\|bosTau2\|chr17 (10781193-10780909)
	31-341, gnl\|Hg17\|chr4 (142142657-142142318)

	392-705, gnl\|bosTau2\|chr17 (10780890-10780565)
	392-705, gnl\|Hg17\|chr4 (142142294-142141986)