Ss1.1-Pig3-SRG8011G08.5
|
ACGAGGCCAACCTTCAGGAGGAAGAGGTACGGTGAGGTGGTGGGTACGGGCTGGGACGGC
AGCCGCGGGTCTTTTCCAAAGTGCCGGCGGCTGGCGGGGCGCGGGTCCCCGGGCGCCGGG
CTGCGCCGGGGAGGGGGCGCCGCGGTCGAGGGTTTGGGAATCGTCCTGGCTCCTTGAAGC
AGCCCCAGGCTGTGGCCCGGGGAGAGTGTATCCTCACCGAGTGTGTTTTTGTGGGTCCAC
GCGCGTCTGTGTGCCTACAATTGCGTAACTTTGAGGACTTTCCTGAGACCTTTTGTAAGT
ATAATGCCCAGCTTTGTTTGCACCGGATTTTAAAAGCGGAATCGAGAGCTGACTCCTGGG
TGACCTCAGATTATTGAGACCGGGAGGGTCAGCACTTAGTTCTGCGTCTGGGGCTGGAAG
TTGTGGGGTGTGTTTGTGTGGTTTAAGGAAGAAACTCGGGGAAAGTTCTCCTTAAAAGAC
TCCTTCGGTTCCCTGCCCCCTCCCTTTCAACGTGAAAAGTTTCTTAGTGAAATATCTTTC
CAGCTGAGGCATTTTGGATTAATAGATAACTCATCAGCCGCATTCTTCTCTGATGAGTCT
AAGACCCCAACCTGAGTAATTAGGTTTTGTAAATTTAGGGGCGTTGCGGTTGTGGGGAAC
AGAAGACGAGAGTTTCAAACTTTGCAATTCATTAAGTGATCATCCAGGCTATTTTAATGG
AACTTGAACGTCTGAGCGTAAATTTTGTGGTGGGTCTGTAACAAGGATAAAAATGTTGCA
GCTGAGGAGCGT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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ACGAGGCCAACCTTCAGGAGGAAGAGGTACGGTGAGGTGGTGGGTACGGGCTGGGACGGC
AGCCGCGGGTCTTTTCCAAAGTGCCGGCGGCTGGCGGGGCGCGGGTCCCCGGGCGCCGGG
CTGCGCCGGGGAGGGGGCGCCGCGGTCGAGGGTTTGGGAATCGTCCTGGCTCCTTGAAGC
AGCCCCAGGCTGTGGCCCGGGGAGAGTGTATCCTCACCGAGTGTGTTTTTGTGGGTCCAC
GCGCGTCTGTGTGCCTACAATTGCGTAACTTTGAGGACTTTCCTGAGACCTTTTGTAAGT
ATAATGCCCAGCTTTGTTTGCACCGGATTTTAAAAGCGGAATCGAGAGCTGACTCCTGGG
TGACCTCAGATTATTGAGACCGGGAGGGTCAGCACTTAGTTCTGCGTCTGGGGCTGGAAG
TTGTGGGGTGTGTTTGTGTGGTTTAAGGAAGAAACTCGGGGAAAGTTCTCCTTAAAAGAC
TCCTTCGGTTCCCTGCCCCCTCCCTTTCAACGTGAAAAGTTTCTTAGTGAAATATCTTTC
CAGCTGAGGCATTTTGGATTAATAGATAACTCATCAGCCGCATTCTTCTCTGATGAGTCT
AAGACCCCAACCTGAGTAATTAGGTTTTGTAAATTTAGGGGCGTTGCGGTTGTGGGGAAC
AGAAGACGAGAGTTTCAAACTTTGCAATTCATTAAGTGATCATCCAGGCTATTTTAATGG
AACTTGAACGTCTGAGCGTAAATTTTGTGGTGGGTCTGTAACAAGGATAAAAATGTTGCA
GCTGAGGAGCGT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
350-445, + strand, RNAmicro p=0.998742 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
350-445, + strand, RNAmicro p=0.998742 |
|
1-444, gnl|bosTau2|chr27 (16195872-16196339) |
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1-444, gnl|Hg17|chr8 (30362191-30362572) |
| |
|
463-792, gnl|bosTau2|chr27 (16196470-16196811) |
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463-792, gnl|canFam2|chr16 (36915205-36914802) |
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463-792, gnl|echTel1|scaffold_322547 (184707-184290) |
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463-792, gnl|hg17|chr8 (30362624-30363018) |
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463-792, gnl|Hg17|chr8 (30362623-30362953) |
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463-792, gnl|loxAfr1|scaffold_12941 (1536-1174) |
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463-792, gnl|mm7|chr8 (32697018-32696637) |
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463-792, gnl|Mm7|chr8 (32697017-32696683) |
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463-792, gnl|oryCun1|scaffold_191334 (3071-3428) |
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463-792, gnl|panTro1|chr7 (31431531-31431925) |
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463-792, gnl|rheMac2|chr8 (30635096-30635485) |
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463-792, gnl|rn3|chr16 (62010369-62010759) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-444, gnl|bosTau2|chr27 (16195872-16196339) |
|
1-444, gnl|Hg17|chr8 (30362191-30362572) |
| |
|
463-792, gnl|bosTau2|chr27 (16196470-16196811) |
|
463-792, gnl|canFam2|chr16 (36915205-36914802) |
|
463-792, gnl|echTel1|scaffold_322547 (184707-184290) |
|
463-792, gnl|hg17|chr8 (30362624-30363018) |
|
463-792, gnl|Hg17|chr8 (30362623-30362953) |
|
463-792, gnl|loxAfr1|scaffold_12941 (1536-1174) |
|
463-792, gnl|mm7|chr8 (32697018-32696637) |
|
463-792, gnl|Mm7|chr8 (32697017-32696683) |
|
463-792, gnl|oryCun1|scaffold_191334 (3071-3428) |
|
463-792, gnl|panTro1|chr7 (31431531-31431925) |
|
463-792, gnl|rheMac2|chr8 (30635096-30635485) |
|
463-792, gnl|rn3|chr16 (62010369-62010759) |
