Ss1.1-Pig3-SRG8011H01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGACTATGACAGGAGAAATGATGAAGTTGACCCCGTGGCAGCTTCGGCTGAGTATGAACT TGAAAAGCGTGTAGAAAAGCTGGAACTTTTCCCAGTGGAATTAGAGAAAGATGAGGATGG ACTTGGTATAAGTATTATTGGAATGGGTGTTGGAGCAGATGCTGGTCTTGAAAAGCTGGG CATATTTGTCAAGACAGTAACAGAAGGTGGTGCTGCTCAGCGTGATGGCAGAATACAGGT CAATGACCAGATTGTGGAAGTAGATGGAATCAGCTTGGTGGGTGTCACACAGAATTTTGC TGCAACGGTTCTCAGAAACACCAAGGGCAATGTGAGATTTGTTATTGGGCGAGAAAAACC AGGACAAGTGAGTGAGGTTGCCCAGTTGATAAGCCAGACGCTGGAGCAAGAAAGGCGCCA GAGAGAGCTGCTTGAACAGCATTATGCTCAGTATGATGCCGACGATGATGAGACAGGAGA ATATGCCACAGATGAAGAGGAAGATGAGGTAGGACCTGTTCTTCCTGGCAGTGACTTGGC CATTGAAGTCTTCGAGCTGCCTGAGAACGAGGACATGTTTTCCCCTTCAGACCTGGACAC AACCAAGCTCAGTCACAAGTTCAAAGAGTTGCAAATCAAACATGCAGTTACAGAAGCAGA GATTCAGAAATTGAAGACCAAGCTGCAAGCAGCAGAAAATGAGAAAGTGAGGTGGGAGCT AGAAAAGACGCAACTCCAACAGAATATAGAAGAGAATAAAGAAAGAATGTTAAAGTTGGA GAGCTATTGGATTGAGGCTCAAACGTTATGCCACACAGTGAATGAGCACCTAAAAGAGAC CCAAAGCCAGTATCAGGCCTTGGAAAAGAAATACAATAAAGCAAAGAAACTGATCAAGGA TTTTCAGCAAAAAGAACTTGATTTCATCAAAAGACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGACTATGACAGGAGAAATGATGAAGTTGACCCCGTGGCAGCTTCGGCTGAGTATGAACT TGAAAAGCGTGTAGAAAAGCTGGAACTTTTCCCAGTGGAATTAGAGAAAGATGAGGATGG ACTTGGTATAAGTATTATTGGAATGGGTGTTGGAGCAGATGCTGGTCTTGAAAAGCTGGG CATATTTGTCAAGACAGTAACAGAAGGTGGTGCTGCTCAGCGTGATGGCAGAATACAGGT CAATGACCAGATTGTGGAAGTAGATGGAATCAGCTTGGTGGGTGTCACACAGAATTTTGC TGCAACGGTTCTCAGAAACACCAAGGGCAATGTGAGATTTGTTATTGGGCGAGAAAAACC AGGACAAGTGAGTGAGGTTGCCCAGTTGATAAGCCAGACGCTGGAGCAAGAAAGGCGCCA GAGAGAGCTGCTTGAACAGCATTATGCTCAGTATGATGCCGACGATGATGAGACAGGAGA ATATGCCACAGATGAAGAGGAAGATGAGGTAGGACCTGTTCTTCCTGGCAGTGACTTGGC CATTGAAGTCTTCGAGCTGCCTGAGAACGAGGACATGTTTTCCCCTTCAGACCTGGACAC AACCAAGCTCAGTCACAAGTTCAAAGAGTTGCAAATCAAACATGCAGTTACAGAAGCAGA GATTCAGAAATTGAAGACCAAGCTGCAAGCAGCAGAAAATGAGAAAGTGAGGTGGGAGCT AGAAAAGACGCAACTCCAACAGAATATAGAAGAGAATAAAGAAAGAATGTTAAAGTTGGA GAGCTATTGGATTGAGGCTCAAACGTTATGCCACACAGTGAATGAGCACCTAAAAGAGAC CCAAAGCCAGTATCAGGCCTTGGAAAAGAAATACAATAAAGCAAAGAAACTGATCAAGGA TTTTCAGCAAAAAGAACTTGATTTCATCAAAAGACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 720-879, + strand, RNAz p=0.894268 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 720-879, + strand, RNAz p=0.894268 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 109-231, gnl|bosTau2|chr4 (2337888-2338010) | |
| 109-231, gnl|canFam2|chr14 (23367963-23368106) | |
| 109-231, gnl|danRer3|chr19 (57145357-57145222) | |
| 109-231, gnl|dasNov1|scaffold_187644 (4378-4521) | |
| 109-231, gnl|echTel1|scaffold_317312 (10812-10669) | |
| 109-231, gnl|fr1|chrUn (35489464-35489321) | |
| 109-231, gnl|galGal2|chr2 (23093968-23094111) | |
| 109-231, gnl|hg17|chr7 (94394666-94394809) | |
| 109-231, gnl|Hg17|chr7 (94394673-94394795) | |
| 109-231, gnl|loxAfr1|scaffold_5693 (14421-14564) | |
| 109-231, gnl|mm7|chr6 (5010335-5010478) | |
| 109-231, gnl|Mm7|chr6 (5010342-5010464) | |
| 109-231, gnl|oryCun1|scaffold_172757 (11641-11498) | |
| 109-231, gnl|panTro1|chr6 (96005379-96005522) | |
| 109-231, gnl|rheMac2|chr3 (122141733-122141590) | |
| 109-231, gnl|rn3|chr4 (29866377-29866517) | |
| 109-231, gnl|tetNig1|chr2 (667034-666901) | |
| 109-231, gnl|xenTro1|scaffold_640 (302377-302235) | |
| 471-628, gnl|bosTau2|chr4 (2404389-2404546) | |
| 471-628, gnl|canFam2|chr14 (23434066-23434275) | |
| 471-628, gnl|danRer3|chr19 (57125066-57124856) | |
| 471-628, gnl|dasNov1|scaffold_1333 (12470-12679) | |
| 471-628, gnl|echTel1|scaffold_300779 (133431-133222) | |
| 471-628, gnl|fr1|chrUn (35484555-35484380) | |
| 471-628, gnl|galGal2|chr2 (23121205-23121415) | |
| 471-628, gnl|hg17|chr7 (94499874-94500083) | |
| 471-628, gnl|Hg17|chr7 (94499922-94500079) | |
| 471-628, gnl|mm7|chr6 (5053268-5053477) | |
| 471-628, gnl|Mm7|chr6 (5053316-5053473) | |
| 471-628, gnl|oryCun1|scaffold_173134 (112124-111915) | |
| 471-628, gnl|panTro1|chr6 (96110328-96110537) | |
| 471-628, gnl|rheMac2|chr3 (122038452-122038243) | |
| 471-628, gnl|rn3|chr4 (29906680-29906889) | |
| 471-628, gnl|tetNig1|chrUn_random (37536065-37535911) | |
| 471-628, gnl|xenTro1|scaffold_640 (282549-282366) | |
| 681-912, gnl|bosTau2|chr19 (29235013-29235244) | |
| 681-912, gnl|Hg17|chr17 (45568563-45568332) | |
| 681-912, gnl|Mm7|chr11 (95113598-95113829) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 109-231, gnl|bosTau2|chr4 (2337888-2338010) | |
| 109-231, gnl|canFam2|chr14 (23367963-23368106) | |
| 109-231, gnl|danRer3|chr19 (57145357-57145222) | |
| 109-231, gnl|dasNov1|scaffold_187644 (4378-4521) | |
| 109-231, gnl|echTel1|scaffold_317312 (10812-10669) | |
| 109-231, gnl|fr1|chrUn (35489464-35489321) | |
| 109-231, gnl|galGal2|chr2 (23093968-23094111) | |
| 109-231, gnl|hg17|chr7 (94394666-94394809) | |
| 109-231, gnl|Hg17|chr7 (94394673-94394795) | |
| 109-231, gnl|loxAfr1|scaffold_5693 (14421-14564) | |
| 109-231, gnl|mm7|chr6 (5010335-5010478) | |
| 109-231, gnl|Mm7|chr6 (5010342-5010464) | |
| 109-231, gnl|oryCun1|scaffold_172757 (11641-11498) | |
| 109-231, gnl|panTro1|chr6 (96005379-96005522) | |
| 109-231, gnl|rheMac2|chr3 (122141733-122141590) | |
| 109-231, gnl|rn3|chr4 (29866377-29866517) | |
| 109-231, gnl|tetNig1|chr2 (667034-666901) | |
| 109-231, gnl|xenTro1|scaffold_640 (302377-302235) | |
| 471-628, gnl|bosTau2|chr4 (2404389-2404546) | |
| 471-628, gnl|canFam2|chr14 (23434066-23434275) | |
| 471-628, gnl|danRer3|chr19 (57125066-57124856) | |
| 471-628, gnl|dasNov1|scaffold_1333 (12470-12679) | |
| 471-628, gnl|echTel1|scaffold_300779 (133431-133222) | |
| 471-628, gnl|fr1|chrUn (35484555-35484380) | |
| 471-628, gnl|galGal2|chr2 (23121205-23121415) | |
| 471-628, gnl|hg17|chr7 (94499874-94500083) | |
| 471-628, gnl|Hg17|chr7 (94499922-94500079) | |
| 471-628, gnl|mm7|chr6 (5053268-5053477) | |
| 471-628, gnl|Mm7|chr6 (5053316-5053473) | |
| 471-628, gnl|oryCun1|scaffold_173134 (112124-111915) | |
| 471-628, gnl|panTro1|chr6 (96110328-96110537) | |
| 471-628, gnl|rheMac2|chr3 (122038452-122038243) | |
| 471-628, gnl|rn3|chr4 (29906680-29906889) | |
| 471-628, gnl|tetNig1|chrUn_random (37536065-37535911) | |
| 471-628, gnl|xenTro1|scaffold_640 (282549-282366) | |
| 681-912, gnl|bosTau2|chr19 (29235013-29235244) | |
| 681-912, gnl|Hg17|chr17 (45568563-45568332) | |
| 681-912, gnl|Mm7|chr11 (95113598-95113829) |