Non-Coding RNA Search

Ss1.1-Pig3-SRG8011H03.5

Sequence:


               
               GTGATTCTGGGGAATGGACTGTGGTTGCCCAAAACAGGCAGGCAAATCTTCAATTTCAGT
GATTTTAACTGTGGAAGCTGTGGAACATCAAGTAAAACCAGTGTTTGTGGAAAAACTGAA
AAATGTCAATGTAAAGGAAGGTTCCCGGCTTGAGATGAAAGTCAGAGCTACGGGTAACCC
CAATCCTGACATTGTATGGTTGAAAAACAGTGAGATTATTGTACCTCATAAATATCCAAA
AATCATAATTGAAGGCACCAAGGGAGAAGCTGCCCTTAAAATCGATTCCACCGTCAGCCA
AGACTCTGCCTGGTACACTGCAACTGCTATTAATAAGGCTGGCCGAGACACTACAAGATG
CAAAGTAAATGTGGAAGTTGAGTTTGCAGAGCCTGAGCCAGATAGAAGATTAATCATCCC
ACGATGGACATATAGAGCAAAGGAGATTGCAGCCCCATAACTGGAGCCCCTCCATTTGCG
ATACGGTCAATATCAGTGGGAAGATGGTGACCTCTATGACAAAGAGAAACAGCAAAAGCC
ATTTTTCAAGAAAAAACTCACTTCCTTAAGACTCAAGCGCTTTGGACCTGCCCACTTTGA
ATGCAGGCTAACGCCCATCGGTGACCCTACGATGGTGGTGGAATGGCTCCACGATGGAAA
GCCACTTGAAGCAGCCAATAGGCTCCGTATGATCAATGAATTCGGGTATTGCAGCCTTGA
TTATGGAGTTGCATATTCCAGAGACAGTGGTGTCATTACTTGCAGAGCTACCAACAAATA
CGGAACCGATCACACATCCGCGACCCTTATTGTTAAAGATGAGAAGAGTCTTGTAGAAGA
ATCTCAGTTGCCTGAGGGGAGGAAAGGCTTACAGAGAATTGAAGAATTAGAGCGGATGGC
TCATGAGGGTGCCCTTACAGGTGTAACCACCGATCAAAAAGAGAAGCAAAAGCCAGATAT
TGTCTTGTTCCCAGAGCCAGTAAGAGTGCTTGAAGGGGAGACCGCCAGGTTCCGTTGCCG
GGTGACAGGGTACCCTCAGCCCAAAGTCAACTGGTACCTCAATGGGCAGCTCATCCGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGATTCTGGGGAATGGACTGTGGTTGCCCAAAACAGGCAGGCAAATCTTCAATTTCAGT
GATTTTAACTGTGGAAGCTGTGGAACATCAAGTAAAACCAGTGTTTGTGGAAAAACTGAA
AAATGTCAATGTAAAGGAAGGTTCCCGGCTTGAGATGAAAGTCAGAGCTACGGGTAACCC
CAATCCTGACATTGTATGGTTGAAAAACAGTGAGATTATTGTACCTCATAAATATCCAAA
AATCATAATTGAAGGCACCAAGGGAGAAGCTGCCCTTAAAATCGATTCCACCGTCAGCCA
AGACTCTGCCTGGTACACTGCAACTGCTATTAATAAGGCTGGCCGAGACACTACAAGATG
CAAAGTAAATGTGGAAGTTGAGTTTGCAGAGCCTGAGCCAGATAGAAGATTAATCATCCC
ACGATGGACATATAGAGCAAAGGAGATTGCAGCCCCATAACTGGAGCCCCTCCATTTGCG
ATACGGTCAATATCAGTGGGAAGATGGTGACCTCTATGACAAAGAGAAACAGCAAAAGCC
ATTTTTCAAGAAAAAACTCACTTCCTTAAGACTCAAGCGCTTTGGACCTGCCCACTTTGA
ATGCAGGCTAACGCCCATCGGTGACCCTACGATGGTGGTGGAATGGCTCCACGATGGAAA
GCCACTTGAAGCAGCCAATAGGCTCCGTATGATCAATGAATTCGGGTATTGCAGCCTTGA
TTATGGAGTTGCATATTCCAGAGACAGTGGTGTCATTACTTGCAGAGCTACCAACAAATA
CGGAACCGATCACACATCCGCGACCCTTATTGTTAAAGATGAGAAGAGTCTTGTAGAAGA
ATCTCAGTTGCCTGAGGGGAGGAAAGGCTTACAGAGAATTGAAGAATTAGAGCGGATGGC
TCATGAGGGTGCCCTTACAGGTGTAACCACCGATCAAAAAGAGAAGCAAAAGCCAGATAT
TGTCTTGTTCCCAGAGCCAGTAAGAGTGCTTGAAGGGGAGACCGCCAGGTTCCGTTGCCG
GGTGACAGGGTACCCTCAGCCCAAAGTCAACTGGTACCTCAATGGGCAGCTCATCCGCAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               76-245, - strand, RNAz p=0.774838
               

               
               326-525, + strand, RNAz p=0.982285

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               76-245, - strand, RNAz p=0.774838
               

               
               326-525, + strand, RNAz p=0.982285

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               85-192, - strand, RNAmicro p=0.938193

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               85-192, - strand, RNAmicro p=0.938193

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               76-245, gnl|bosTau2|chr2 (7612258-7612427)
               

               
               76-245, gnl|Hg17|chr2 (179467552-179467383)
               

               
               76-245, gnl|Mm7|chr2 (76790003-76789834)
               


               
               247-889, gnl|bosTau2|chr2 (7612530-7613172)
               

               
               247-889, gnl|Hg17|chr2 (179467282-179466410)
               

               
               247-889, gnl|Mm7|chr2 (76789718-76788846)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               76-245, gnl|bosTau2|chr2 (7612258-7612427)
               

               
               76-245, gnl|Hg17|chr2 (179467552-179467383)
               

               
               76-245, gnl|Mm7|chr2 (76790003-76789834)
               


               
               247-889, gnl|bosTau2|chr2 (7612530-7613172)
               

               
               247-889, gnl|Hg17|chr2 (179467282-179466410)
               

               
               247-889, gnl|Mm7|chr2 (76789718-76788846)

	76-245, - strand, RNAz p=0.774838
	326-525, + strand, RNAz p=0.982285

	76-245, gnl\|bosTau2\|chr2 (7612258-7612427)
	76-245, gnl\|Hg17\|chr2 (179467552-179467383)
	76-245, gnl\|Mm7\|chr2 (76790003-76789834)

	247-889, gnl\|bosTau2\|chr2 (7612530-7613172)
	247-889, gnl\|Hg17\|chr2 (179467282-179466410)
	247-889, gnl\|Mm7\|chr2 (76789718-76788846)