Non-Coding RNA Search

Ss1.1-Pig3-SRG8011H15.3

Sequence:


               
               GTTGTTTCCTAGTTTCATGTTGGCTTATTTTAACACATGGAAGTAGTTGCCGTTTGTTGT
AAGGTGTGTATGTAACCTCTGTTAACTTTGTGGTCTGAAGTGTTTAGCTATCAAGCAGAT
TCTTTAGTAGACCAAAATTTTTTGTCACTGAAATGTTCTGAAGTATATACCTTGATGTTT
AAAAGAAACACTTGTCCCAGCAAGTTTTCATCTTCTGGGATATACTTTGTAAAGCTTCCA
TCCCCTGTAGTTATGACTGCATGTGCCAGGCCTCTAGAAGTTAGTGTGTTAAGCTGAACC
AACTTGATTGGAGTCATTGTCCATACATCGGGCTTGTTTTCCAAAGAAAAATATTGTTTA
GAGTAGCAAAATTATAAGCCTGCCCAGGCATGTTGTAAAGCCGCTGGAAAGGTAACTTGG
AGCAAGTTTTGTGAATGGAAATGTAGTGCTCAAGTCACATTCTGCTTCAAAAAGTTGTAA
CAAATACAGATGAATTAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGTTTCCTAGTTTCATGTTGGCTTATTTTAACACATGGAAGTAGTTGCCGTTTGTTGT
AAGGTGTGTATGTAACCTCTGTTAACTTTGTGGTCTGAAGTGTTTAGCTATCAAGCAGAT
TCTTTAGTAGACCAAAATTTTTTGTCACTGAAATGTTCTGAAGTATATACCTTGATGTTT
AAAAGAAACACTTGTCCCAGCAAGTTTTCATCTTCTGGGATATACTTTGTAAAGCTTCCA
TCCCCTGTAGTTATGACTGCATGTGCCAGGCCTCTAGAAGTTAGTGTGTTAAGCTGAACC
AACTTGATTGGAGTCATTGTCCATACATCGGGCTTGTTTTCCAAAGAAAAATATTGTTTA
GAGTAGCAAAATTATAAGCCTGCCCAGGCATGTTGTAAAGCCGCTGGAAAGGTAACTTGG
AGCAAGTTTTGTGAATGGAAATGTAGTGCTCAAGTCACATTCTGCTTCAAAAAGTTGTAA
CAAATACAGATGAATTAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               347-466, - strand, RNAz p=0.767921

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               347-466, - strand, RNAz p=0.767921

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               199-508, gnl|bosTau2|chr1 (49726857-49727169)
               

               
               199-508, gnl|Hg17|chr11 (27866589-27866294)
               


               
               231-504, gnl|bosTau2|chr8 (2308774-2309039)
               

               
               231-504, gnl|Hg17|chr3 (185319473-185319739)
               

               
               231-504, gnl|Mm7|chr6 (5240841-5240616)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               199-508, gnl|bosTau2|chr1 (49726857-49727169)
               

               
               199-508, gnl|Hg17|chr11 (27866589-27866294)
               


               
               231-504, gnl|bosTau2|chr8 (2308774-2309039)
               

               
               231-504, gnl|Hg17|chr3 (185319473-185319739)
               

               
               231-504, gnl|Mm7|chr6 (5240841-5240616)

	199-508, gnl\|bosTau2\|chr1 (49726857-49727169)
	199-508, gnl\|Hg17\|chr11 (27866589-27866294)

	231-504, gnl\|bosTau2\|chr8 (2308774-2309039)
	231-504, gnl\|Hg17\|chr3 (185319473-185319739)
	231-504, gnl\|Mm7\|chr6 (5240841-5240616)