Ss1.1-Pig3-SRG8011I03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGAAACAGCCATGCTCAGATCGATTCCGAATTATAAAGCCCAGAAACTGAGAGAAATGT TAAAAGAAGAGTTGAGAAAAGAGAAGAAGCAATGGAAAAACAAACATGCCGTAAATGAAA ATCAGAGGCCACAAGATCGTTCAAAAATGACTATGAGAGATTTCATATATTACCTGCCAA ATAACAATCCAATGACTTCTTCACTGGAGCAAGAAAAGAAAACTGAAAAATCGTCGACAC CAGTCCAAACAAGAGAGCAAGAAGGTAAGAGTACTCCTGATGGTGAAGATAATGAAGAAA TAGAAGAAGAGATGGATGATGGTCCATTGCTGGTTCCTCGAGTCAAAGTGGCAGAAGATG GTTCTATTATTTTGGATGAAGAAAGTTTAACTGTAGAAGTTTTGAGAACAAAAGGTCCCT GTGTTGTTGAGGAAAATGACCCCATATTTGAGCGTGGTTCTACAACTACATATTCCAGCT TTAGGAAAAACTATTACTCTAAACCGTGGTCAAATAAAGAAACAGATATGTTTTTTTTAG CCATCAGCATGGTAGGAACTGACTTTTCTATGATCGGACAGCTTTTTCCTCACAGAGCAA GGATAGAAATTAAGAATAAATTTAAACGTGAAGAGAAAACAAATGGATGGAGAATAGACA AAGCATTCCAGGAAAAGCGCCCTTTTGACTTCGATTTTTTTGCTCATTTGCTTCAGAAAG TGCTTGCTGAAGAAGAGAAAAGAAAGCAAAAGTCTGTTAAAAATCAGAGTTCAAAGGAGA AGTCCTCTAAATCACGGAAAAATGTAAAAGTGAAAAAAGTTACCAATGAAAGAGTGAGTG ACGATCCAGCTGAGTCTGTGAGTGCTAGAATTTCAGATGCAGAAGGATCCCAAAAGGATA CTCAGACAGTTGAAGAAGAACAACAATCTCTGACTTTATCAGCACAGGATTCAGAACAGA ATGTAGTAGAACAAGACCAAAACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGAAACAGCCATGCTCAGATCGATTCCGAATTATAAAGCCCAGAAACTGAGAGAAATGT TAAAAGAAGAGTTGAGAAAAGAGAAGAAGCAATGGAAAAACAAACATGCCGTAAATGAAA ATCAGAGGCCACAAGATCGTTCAAAAATGACTATGAGAGATTTCATATATTACCTGCCAA ATAACAATCCAATGACTTCTTCACTGGAGCAAGAAAAGAAAACTGAAAAATCGTCGACAC CAGTCCAAACAAGAGAGCAAGAAGGTAAGAGTACTCCTGATGGTGAAGATAATGAAGAAA TAGAAGAAGAGATGGATGATGGTCCATTGCTGGTTCCTCGAGTCAAAGTGGCAGAAGATG GTTCTATTATTTTGGATGAAGAAAGTTTAACTGTAGAAGTTTTGAGAACAAAAGGTCCCT GTGTTGTTGAGGAAAATGACCCCATATTTGAGCGTGGTTCTACAACTACATATTCCAGCT TTAGGAAAAACTATTACTCTAAACCGTGGTCAAATAAAGAAACAGATATGTTTTTTTTAG CCATCAGCATGGTAGGAACTGACTTTTCTATGATCGGACAGCTTTTTCCTCACAGAGCAA GGATAGAAATTAAGAATAAATTTAAACGTGAAGAGAAAACAAATGGATGGAGAATAGACA AAGCATTCCAGGAAAAGCGCCCTTTTGACTTCGATTTTTTTGCTCATTTGCTTCAGAAAG TGCTTGCTGAAGAAGAGAAAAGAAAGCAAAAGTCTGTTAAAAATCAGAGTTCAAAGGAGA AGTCCTCTAAATCACGGAAAAATGTAAAAGTGAAAAAAGTTACCAATGAAAGAGTGAGTG ACGATCCAGCTGAGTCTGTGAGTGCTAGAATTTCAGATGCAGAAGGATCCCAAAAGGATA CTCAGACAGTTGAAGAAGAACAACAATCTCTGACTTTATCAGCACAGGATTCAGAACAGA ATGTAGTAGAACAAGACCAAAACC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 696-810, - strand, RNAz p=0.523822 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 696-810, - strand, RNAz p=0.523822 |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 85-196, gnl|bosTau2|chr20 (4687397-4687508) | |
| 85-196, gnl|Hg17|chr5 (70793398-70793509) | |
| 85-196, gnl|Mm7|chr13 (97171184-97171073) | |
| 384-536, gnl|bosTau2|chr20 (4691650-4691803) | |
| 384-536, gnl|canFam2|chr2 (57537571-57537774) | |
| 384-536, gnl|dasNov1|scaffold_37585 (6545-6749) | |
| 384-536, gnl|echTel1|scaffold_211282 (4778-4579) | |
| 384-536, gnl|fr1|chrUn (234241661-234241502) | |
| 384-536, gnl|galGal2|chrZ_random (6606356-6606532) | |
| 384-536, gnl|hg17|chr5 (70798911-70799115) | |
| 384-536, gnl|Hg17|chr5 (70798935-70799088) | |
| 384-536, gnl|loxAfr1|scaffold_67103 (9-213) | |
| 384-536, gnl|mm7|chr13 (97164940-97164751) | |
| 384-536, gnl|Mm7|chr13 (97164916-97164766) | |
| 384-536, gnl|monDom2|scaffold_60 (4185746-4185948) | |
| 384-536, gnl|oryCun1|scaffold_188959 (18031-18227) | |
| 384-536, gnl|panTro1|chr4 (44659122-44658918) | |
| 384-536, gnl|rheMac2|chr6 (67622223-67622427) | |
| 384-536, gnl|rn3|chr2 (31035883-31035681) | |
| 384-536, gnl|tetNig1|chrUn_random (2162429-2162282) | |
| 670-810, gnl|bosTau2|chr20 (4700506-4700649) | |
| 670-810, gnl|canFam2|chr2 (57549464-57549693) | |
| 670-810, gnl|dasNov1|scaffold_41921 (7566-7309) | |
| 670-810, gnl|echTel1|scaffold_204740 (7201-6979) | |
| 670-810, gnl|galGal2|chrZ_random (6608990-6609240) | |
| 670-810, gnl|hg17|chr5 (70818000-70818239) | |
| 670-810, gnl|Hg17|chr5 (70818067-70818210) | |
| 670-810, gnl|loxAfr1|scaffold_67103 (9241-9462) | |
| 670-810, gnl|mm7|chr13 (97151457-97151235) | |
| 670-810, gnl|Mm7|chr13 (97151384-97151244) | |
| 670-810, gnl|monDom2|scaffold_60 (4203147-4203385) | |
| 670-810, gnl|panTro1|chr4 (44640360-44640121) | |
| 670-810, gnl|rheMac2|chr6 (67643450-67643689) | |
| 670-810, gnl|rn3|chr2 (31022168-31021941) | |
| 839-976, gnl|bosTau2|chr20 (4704135-4704272) | |
| 839-976, gnl|canFam2|chr2 (57552542-57552853) | |
| 839-976, gnl|dasNov1|scaffold_41921 (4257-3947) | |
| 839-976, gnl|echTel1|scaffold_63033 (375-67) | |
| 839-976, gnl|galGal2|chrZ_random (6611165-6611485) | |
| 839-976, gnl|hg17|chr5 (70820982-70821288) | |
| 839-976, gnl|Hg17|chr5 (70821015-70821146) | |
| 839-976, gnl|loxAfr1|scaffold_67103 (13484-13796) | |
| 839-976, gnl|mm7|chr13 (97150705-97150396) | |
| 839-976, gnl|Mm7|chr13 (97150670-97150536) | |
| 839-976, gnl|monDom2|scaffold_60 (4203772-4204074) | |
| 839-976, gnl|oryCun1|scaffold_195459 (6807-7126) | |
| 839-976, gnl|panTro1|chr4 (44637366-44637060) | |
| 839-976, gnl|rheMac2|chr6 (67646396-67646702) | |
| 839-976, gnl|rn3|chr2 (31021418-31021100) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 85-196, gnl|bosTau2|chr20 (4687397-4687508) | |
| 85-196, gnl|Hg17|chr5 (70793398-70793509) | |
| 85-196, gnl|Mm7|chr13 (97171184-97171073) | |
| 384-536, gnl|bosTau2|chr20 (4691650-4691803) | |
| 384-536, gnl|canFam2|chr2 (57537571-57537774) | |
| 384-536, gnl|dasNov1|scaffold_37585 (6545-6749) | |
| 384-536, gnl|echTel1|scaffold_211282 (4778-4579) | |
| 384-536, gnl|fr1|chrUn (234241661-234241502) | |
| 384-536, gnl|galGal2|chrZ_random (6606356-6606532) | |
| 384-536, gnl|hg17|chr5 (70798911-70799115) | |
| 384-536, gnl|Hg17|chr5 (70798935-70799088) | |
| 384-536, gnl|loxAfr1|scaffold_67103 (9-213) | |
| 384-536, gnl|mm7|chr13 (97164940-97164751) | |
| 384-536, gnl|Mm7|chr13 (97164916-97164766) | |
| 384-536, gnl|monDom2|scaffold_60 (4185746-4185948) | |
| 384-536, gnl|oryCun1|scaffold_188959 (18031-18227) | |
| 384-536, gnl|panTro1|chr4 (44659122-44658918) | |
| 384-536, gnl|rheMac2|chr6 (67622223-67622427) | |
| 384-536, gnl|rn3|chr2 (31035883-31035681) | |
| 384-536, gnl|tetNig1|chrUn_random (2162429-2162282) | |
| 670-810, gnl|bosTau2|chr20 (4700506-4700649) | |
| 670-810, gnl|canFam2|chr2 (57549464-57549693) | |
| 670-810, gnl|dasNov1|scaffold_41921 (7566-7309) | |
| 670-810, gnl|echTel1|scaffold_204740 (7201-6979) | |
| 670-810, gnl|galGal2|chrZ_random (6608990-6609240) | |
| 670-810, gnl|hg17|chr5 (70818000-70818239) | |
| 670-810, gnl|Hg17|chr5 (70818067-70818210) | |
| 670-810, gnl|loxAfr1|scaffold_67103 (9241-9462) | |
| 670-810, gnl|mm7|chr13 (97151457-97151235) | |
| 670-810, gnl|Mm7|chr13 (97151384-97151244) | |
| 670-810, gnl|monDom2|scaffold_60 (4203147-4203385) | |
| 670-810, gnl|panTro1|chr4 (44640360-44640121) | |
| 670-810, gnl|rheMac2|chr6 (67643450-67643689) | |
| 670-810, gnl|rn3|chr2 (31022168-31021941) | |
| 839-976, gnl|bosTau2|chr20 (4704135-4704272) | |
| 839-976, gnl|canFam2|chr2 (57552542-57552853) | |
| 839-976, gnl|dasNov1|scaffold_41921 (4257-3947) | |
| 839-976, gnl|echTel1|scaffold_63033 (375-67) | |
| 839-976, gnl|galGal2|chrZ_random (6611165-6611485) | |
| 839-976, gnl|hg17|chr5 (70820982-70821288) | |
| 839-976, gnl|Hg17|chr5 (70821015-70821146) | |
| 839-976, gnl|loxAfr1|scaffold_67103 (13484-13796) | |
| 839-976, gnl|mm7|chr13 (97150705-97150396) | |
| 839-976, gnl|Mm7|chr13 (97150670-97150536) | |
| 839-976, gnl|monDom2|scaffold_60 (4203772-4204074) | |
| 839-976, gnl|oryCun1|scaffold_195459 (6807-7126) | |
| 839-976, gnl|panTro1|chr4 (44637366-44637060) | |
| 839-976, gnl|rheMac2|chr6 (67646396-67646702) | |
| 839-976, gnl|rn3|chr2 (31021418-31021100) |