Non-Coding RNA Search

Ss1.1-Pig3-SRG8011I10.3

Sequence:


               
               GCGGCTCGAGGGAGGCCCTCGTCTCTTCTTGTTCCTCCACAGTGTGGGGCTTTGGTTTCC
TCAGTGTCTCACTGATTAACCTGGCCTCTCTCCTGGGAGTCCTCGTCCTGCCGTGCACAG
AGAAAGCATTTTTCAGCCGTGTGCTCACTTACTTCATCGCCCTGTCCATTGGAACGCTGC
TCTGTAATGCGCTCTTCCAGCTCATCCCAGAGGTGCAGTATAATAGAACCCTGCGCGTCC
TCTCTCCCCGGGGCGCCCCCGCCCCCACCCTGTGCTCAAAGGCACCTGACAGCTGCCACC
TGAAACATTAACCTTTCCCTCATGTCAAGGGACGCCAATGACTTCTGCCTCTGGATCTCA
AGGGCTCCTTTCGTTCCTGGGGCACCAGGTTTGCCTCTGGCCTCTTCAGGGGATGTCAGG
TGCAAGGTGCTTATCATTTGCCCCCTGTCTCGGGGACCTCAGCCTCCTTCCTCCGTCAAT
GCCTGTTCTAAGCCCCAGTGGCAGGGTTCAGAGGGAAAGCTGCACGGTGGTGGCTGTCCC
TGCCCTTGGTCCTATGGACCCCTCTCTGTTATAAGAAGCCGCTGCGGCAGTACTCAGGTG
TGGCCACCAGAAGATTGTCCACCTCCAGTGAGGTGAAAGGAAAGAGGTTACCAACGGCAA
AGCTGAATTGGCATGAGAAGTACGTACTCCTTTTTTTTAAGCAGGACATAATCCATAGTG
GAGGAGCCAAACACAGAATGAAGACTGCTGAACAAGGGAGTTCCCTTCATAGCTCAGCAG
TTAACGAACCTGACTAGTATCCATGAGGTTGTGGATTCGATATCTGGCCTCAGTCGGGGT
TAAGGATCCGGCCTTGCCGTGTGCTGTGGAATAGGTTGCAGATGCAGCTCGAAATCCTGT
GTGGCTGTGGTGTAGGGGGGCAGCTATAACTCCAATTTGACCCCTAGCCTGGGAACTTCC
ATATGCTGCAGGTGCGGCCCTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGGGAGGCCCTCGTCTCTTCTTGTTCCTCCACAGTGTGGGGCTTTGGTTTCC
TCAGTGTCTCACTGATTAACCTGGCCTCTCTCCTGGGAGTCCTCGTCCTGCCGTGCACAG
AGAAAGCATTTTTCAGCCGTGTGCTCACTTACTTCATCGCCCTGTCCATTGGAACGCTGC
TCTGTAATGCGCTCTTCCAGCTCATCCCAGAGGTGCAGTATAATAGAACCCTGCGCGTCC
TCTCTCCCCGGGGCGCCCCCGCCCCCACCCTGTGCTCAAAGGCACCTGACAGCTGCCACC
TGAAACATTAACCTTTCCCTCATGTCAAGGGACGCCAATGACTTCTGCCTCTGGATCTCA
AGGGCTCCTTTCGTTCCTGGGGCACCAGGTTTGCCTCTGGCCTCTTCAGGGGATGTCAGG
TGCAAGGTGCTTATCATTTGCCCCCTGTCTCGGGGACCTCAGCCTCCTTCCTCCGTCAAT
GCCTGTTCTAAGCCCCAGTGGCAGGGTTCAGAGGGAAAGCTGCACGGTGGTGGCTGTCCC
TGCCCTTGGTCCTATGGACCCCTCTCTGTTATAAGAAGCCGCTGCGGCAGTACTCAGGTG
TGGCCACCAGAAGATTGTCCACCTCCAGTGAGGTGAAAGGAAAGAGGTTACCAACGGCAA
AGCTGAATTGGCATGAGAAGTACGTACTCCTTTTTTTTAAGCAGGACATAATCCATAGTG
GAGGAGCCAAACACAGAATGAAGACTGCTGAACAAGGGAGTTCCCTTCATAGCTCAGCAG
TTAACGAACCTGACTAGTATCCATGAGGTTGTGGATTCGATATCTGGCCTCAGTCGGGGT
TAAGGATCCGGCCTTGCCGTGTGCTGTGGAATAGGTTGCAGATGCAGCTCGAAATCCTGT
GTGGCTGTGGTGTAGGGGGGCAGCTATAACTCCAATTTGACCCCTAGCCTGGGAACTTCC
ATATGCTGCAGGTGCGGCCCTAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               577-715, - strand, RNAz p=0.967695

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               577-715, - strand, RNAz p=0.967695

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               11-445, gnl|bosTau2|chr8 (31151776-31151341)
               

               
               11-445, gnl|Hg17|chr8 (22323372-22323806)
               

               
               11-445, gnl|Mm7|chr14 (64960349-64959919)
               


               
               459-715, gnl|bosTau2|chr8 (31151303-31151053)
               

               
               459-715, gnl|Hg17|chr8 (22323820-22324046)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-445, gnl|bosTau2|chr8 (31151776-31151341)
               

               
               11-445, gnl|Hg17|chr8 (22323372-22323806)
               

               
               11-445, gnl|Mm7|chr14 (64960349-64959919)
               


               
               459-715, gnl|bosTau2|chr8 (31151303-31151053)
               

               
               459-715, gnl|Hg17|chr8 (22323820-22324046)

	11-445, gnl\|bosTau2\|chr8 (31151776-31151341)
	11-445, gnl\|Hg17\|chr8 (22323372-22323806)
	11-445, gnl\|Mm7\|chr14 (64960349-64959919)

	459-715, gnl\|bosTau2\|chr8 (31151303-31151053)
	459-715, gnl\|Hg17\|chr8 (22323820-22324046)