Ss1.1-Pig3-SRG8011I12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCGGGCTGGATCACTGTGTGCGCGGAGCTGGACCGCGAGGAGGTGGAGCACTACAGCTT TGGGGTGGAAGCGGTGGACCACGGCTCGCCGCCCATGATCTCCTCGGCCAGCGTGTCCAT CACGGTGCTGGACGTCAACGACAACGACCCCGTGTTCACACAGCCTGCGTATGATCTGCG CCTGAATGAGGACGCCGCCGTGGGGAGCAGTGTGCTGACCCTGCGGGCCCTTGACCGGGA TGCTAACAGCGTGATCACCTACCATCTTACCGGCGGCAACACCCGGAACCGCTTCGCCCT CATCAGCCAGAGCGGTGGCGGCCTCATCACGCTGGCGCTGCCGCTGGACTACAAGCAGGA TCGGCAGTACGTGCTGGCGGTCACCGCGTCCGATGGCATGCGCTCGCACACGGCGCATGT CTTCATCAATGTCACGGATGCCAACACCCACCGGCCGGTCTTCCATATCTCCCACTACAC CGTGAGCGTCATCGAGGACCGGCCGGTGGGCACGTCCATCGCCACCATCGGCGCCACCGA CGAGGACACGGGGGAGAACGCTCGCATCACATACGTGCTGGAGGACCCGGTGCCGCAGTT CCGGATTGACCCGGACACTGGCACCATATACACCGTGACAGAGCTGGACTACGAGGACCA GGCCGCATACACGATGGCCATCACAGCCCGGGACAACGGTATCCATCAGAAGTCGGACAC CACGTCCATGGAGATCCTCATCCTGGATGCCAATGACAACGCGCCCCGGTTCATGCGGGA TTTCTACCAGGGCTCTGTCTTCGAGGATGATCCCCCGTCAACCAGCGTCCTCCAGGTCTC GGCCACGGATCGGGACTCGGGCCCCAACGCCCGCCTGCTGTACACCTTCCAGGGTGGGGA CGACGGTGACGGGGACTTATACATCGAGCCCACGTCCGGCGTGATCCGCACCCAGCGCAG GATGGACCGGGAGAACGTGGCGGTGTACAGCCTTCGGGCCCTGGATGTGGACCGGGGCAG CCCGGTGTCCCTTAGCGCCAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCGGGCTGGATCACTGTGTGCGCGGAGCTGGACCGCGAGGAGGTGGAGCACTACAGCTT TGGGGTGGAAGCGGTGGACCACGGCTCGCCGCCCATGATCTCCTCGGCCAGCGTGTCCAT CACGGTGCTGGACGTCAACGACAACGACCCCGTGTTCACACAGCCTGCGTATGATCTGCG CCTGAATGAGGACGCCGCCGTGGGGAGCAGTGTGCTGACCCTGCGGGCCCTTGACCGGGA TGCTAACAGCGTGATCACCTACCATCTTACCGGCGGCAACACCCGGAACCGCTTCGCCCT CATCAGCCAGAGCGGTGGCGGCCTCATCACGCTGGCGCTGCCGCTGGACTACAAGCAGGA TCGGCAGTACGTGCTGGCGGTCACCGCGTCCGATGGCATGCGCTCGCACACGGCGCATGT CTTCATCAATGTCACGGATGCCAACACCCACCGGCCGGTCTTCCATATCTCCCACTACAC CGTGAGCGTCATCGAGGACCGGCCGGTGGGCACGTCCATCGCCACCATCGGCGCCACCGA CGAGGACACGGGGGAGAACGCTCGCATCACATACGTGCTGGAGGACCCGGTGCCGCAGTT CCGGATTGACCCGGACACTGGCACCATATACACCGTGACAGAGCTGGACTACGAGGACCA GGCCGCATACACGATGGCCATCACAGCCCGGGACAACGGTATCCATCAGAAGTCGGACAC CACGTCCATGGAGATCCTCATCCTGGATGCCAATGACAACGCGCCCCGGTTCATGCGGGA TTTCTACCAGGGCTCTGTCTTCGAGGATGATCCCCCGTCAACCAGCGTCCTCCAGGTCTC GGCCACGGATCGGGACTCGGGCCCCAACGCCCGCCTGCTGTACACCTTCCAGGGTGGGGA CGACGGTGACGGGGACTTATACATCGAGCCCACGTCCGGCGTGATCCGCACCCAGCGCAG GATGGACCGGGAGAACGTGGCGGTGTACAGCCTTCGGGCCCTGGATGTGGACCGGGGCAG CCCGGTGTCCCTTAGCGCCAAAAA |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 400-559, - strand, RNAz p=0.985167 | |
| 404-562, + strand, RNAz p=0.998258 | |
| 720-839, - strand, RNAz p=0.8077 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 400-559, - strand, RNAz p=0.985167 | |
| 404-562, + strand, RNAz p=0.998258 | |
| 720-839, - strand, RNAz p=0.8077 |
| Predicted microRNA(s): 5 entry(ies) | More info |
| Predicted microRNA(s): 5 entry(ies) | Help | Less info |
| 416-554, - strand, RNAmicro p=0.999999 | |
| 437-520, + strand, RNAmicro p=0.999868 | |
| 426-526, - strand, RNAmicro p=0.999751 | |
| 666-779, - strand, RNAmicro p=0.999494 | |
| 431-524, + strand, RNAmicro p=0.98888 |
| Predicted microRNA(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 416-554, - strand, RNAmicro p=0.999999 | |
| 437-520, + strand, RNAmicro p=0.999868 | |
| 426-526, - strand, RNAmicro p=0.999751 | |
| 666-779, - strand, RNAmicro p=0.999494 | |
| 431-524, + strand, RNAmicro p=0.98888 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-1039, gnl|bosTau2|chr5 (73725751-73726789) | |
| 1-1039, gnl|canFam2|chr10 (22762528-22761668) | |
| 1-1039, gnl|danRer3|chrUn (14062423-14063278) | |
| 1-1039, gnl|dasNov1|scaffold_114955 (6483-7343) | |
| 1-1039, gnl|echTel1|scaffold_211860 (2486-3347) | |
| 1-1039, gnl|fr1|chrUn (46166125-46166982) | |
| 1-1039, gnl|galGal2|chr12 (9076402-9075545) | |
| 1-1039, gnl|hg17|chr22 (45250596-45251456) | |
| 1-1039, gnl|Hg17|chr22 (45251682-45250644) | |
| 1-1039, gnl|loxAfr1|scaffold_64851 (31493-30635) | |
| 1-1039, gnl|mm7|chr15 (86113100-86113960) | |
| 1-1039, gnl|Mm7|chr15 (86114186-86113148) | |
| 1-1039, gnl|monDom2|scaffold_107 (1495955-1496815) | |
| 1-1039, gnl|oryCun1|scaffold_144380 (6640-5783) | |
| 1-1039, gnl|panTro1|chr23 (45570987-45571847) | |
| 1-1039, gnl|rheMac2|chr10 (90565666-90566526) | |
| 1-1039, gnl|rn3|chr7 (124067317-124068177) | |
| 1-1039, gnl|tetNig1|chrUn_random (55625318-55624461) | |
| 1-1039, gnl|xenTro1|scaffold_24 (1192413-1193270) | |
| 5-1017, gnl|bosTau2|chr22 (39380023-39379011) | |
| 5-1017, gnl|canFam2|chr20 (43460602-43459729) | |
| 5-1017, gnl|danRer3|chrUn (14062444-14063315) | |
| 5-1017, gnl|dasNov1|scaffold_114955 (6504-7380) | |
| 5-1017, gnl|echTel1|scaffold_162521 (2873-3746) | |
| 5-1017, gnl|fr1|chrUn (46166146-46167019) | |
| 5-1017, gnl|galGal2|chr12 (9076381-9075508) | |
| 5-1017, gnl|hg17|chr3 (48671898-48672771) | |
| 5-1017, gnl|Hg17|chr3 (48672956-48671944) | |
| 5-1017, gnl|loxAfr1|scaffold_64851 (31472-30598) | |
| 5-1017, gnl|mm7|chr9 (108539670-108538797) | |
| 5-1017, gnl|Mm7|chr9 (108538610-108539622) | |
| 5-1017, gnl|monDom2|scaffold_5 (77015230-77014357) | |
| 5-1017, gnl|oryCun1|scaffold_187460 (51184-52060) | |
| 5-1017, gnl|panTro1|chr2 (50158011-50158884) | |
| 5-1017, gnl|rheMac2|chr2 (87814288-87813415) | |
| 5-1017, gnl|rn3|chr8 (113905769-113904896) | |
| 5-1017, gnl|tetNig1|chr9 (696311-695437) | |
| 5-1017, gnl|xenTro1|scaffold_72 (1839147-1840020) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-1039, gnl|bosTau2|chr5 (73725751-73726789) | |
| 1-1039, gnl|canFam2|chr10 (22762528-22761668) | |
| 1-1039, gnl|danRer3|chrUn (14062423-14063278) | |
| 1-1039, gnl|dasNov1|scaffold_114955 (6483-7343) | |
| 1-1039, gnl|echTel1|scaffold_211860 (2486-3347) | |
| 1-1039, gnl|fr1|chrUn (46166125-46166982) | |
| 1-1039, gnl|galGal2|chr12 (9076402-9075545) | |
| 1-1039, gnl|hg17|chr22 (45250596-45251456) | |
| 1-1039, gnl|Hg17|chr22 (45251682-45250644) | |
| 1-1039, gnl|loxAfr1|scaffold_64851 (31493-30635) | |
| 1-1039, gnl|mm7|chr15 (86113100-86113960) | |
| 1-1039, gnl|Mm7|chr15 (86114186-86113148) | |
| 1-1039, gnl|monDom2|scaffold_107 (1495955-1496815) | |
| 1-1039, gnl|oryCun1|scaffold_144380 (6640-5783) | |
| 1-1039, gnl|panTro1|chr23 (45570987-45571847) | |
| 1-1039, gnl|rheMac2|chr10 (90565666-90566526) | |
| 1-1039, gnl|rn3|chr7 (124067317-124068177) | |
| 1-1039, gnl|tetNig1|chrUn_random (55625318-55624461) | |
| 1-1039, gnl|xenTro1|scaffold_24 (1192413-1193270) | |
| 5-1017, gnl|bosTau2|chr22 (39380023-39379011) | |
| 5-1017, gnl|canFam2|chr20 (43460602-43459729) | |
| 5-1017, gnl|danRer3|chrUn (14062444-14063315) | |
| 5-1017, gnl|dasNov1|scaffold_114955 (6504-7380) | |
| 5-1017, gnl|echTel1|scaffold_162521 (2873-3746) | |
| 5-1017, gnl|fr1|chrUn (46166146-46167019) | |
| 5-1017, gnl|galGal2|chr12 (9076381-9075508) | |
| 5-1017, gnl|hg17|chr3 (48671898-48672771) | |
| 5-1017, gnl|Hg17|chr3 (48672956-48671944) | |
| 5-1017, gnl|loxAfr1|scaffold_64851 (31472-30598) | |
| 5-1017, gnl|mm7|chr9 (108539670-108538797) | |
| 5-1017, gnl|Mm7|chr9 (108538610-108539622) | |
| 5-1017, gnl|monDom2|scaffold_5 (77015230-77014357) | |
| 5-1017, gnl|oryCun1|scaffold_187460 (51184-52060) | |
| 5-1017, gnl|panTro1|chr2 (50158011-50158884) | |
| 5-1017, gnl|rheMac2|chr2 (87814288-87813415) | |
| 5-1017, gnl|rn3|chr8 (113905769-113904896) | |
| 5-1017, gnl|tetNig1|chr9 (696311-695437) | |
| 5-1017, gnl|xenTro1|scaffold_72 (1839147-1840020) |