Non-Coding RNA Search

Ss1.1-Pig3-SRG8012G24.3

Sequence:


               
               CGGCTATTGATAGCTCTCCCAAAGAGAACACGCCGGTCAGATCATCCTCCAAAAACCACT
ACACCCCCGTGCGCACGGCCAAGCAGACTCCAGGACATTATGGGAAGGATGCTCACCGAA
GTGGAGGACCTGATCTCCATAACTTCATCTCGTCTGGATTTGTCACGTTAGGAATAGGAC
ACACGAAGGGTACAGTGGAAACCATTTTTTACTAAAATACAGAGGTTGCCTATGGAACCC
TGATCAGAGATGCGAAGACGGTGTGGAGGCCATAGGCTGGTCTGGGACAGGATAAGTGGG
GAGGTTCCCCATCAGCTTATCCTGGTGACATGCGTGGCTTCTGACAGCAGCGACCGGGAG
GTCACAAGTGTGACTTTAGGAGGCAATAATAGACTTCCAAGATGCACACGTCCTGCCACC
CCTGGCGTGGAGCATGACGCATATGCTGGATGCTCCCCTCGGGAGGGACCCCGGGCGGCG
TGGTGGGAAACACAGCCCAGAGATGCGGCAGCATCTGCCAAGTGTTTCTCCTCCTCTTGG
CTATTATTCCTCCTCTGTTTTAAAGCCACCCTTTGTTAACTGCTGTCACTCACTGTTCCG
TGTCGTGGGTCTCTAAGCCAGCACACATGTCGAGAGTTTTGTCGTCCTAAGCGCAGCTGC
GTAAACTCTCTCTGTGCTGGGGACACAAAGGTAGAGGTTATGCAGACCTCCAAGCCGCAA
GATGAACGCTAACGTGGCGTTTCTGCCGAGCTGCTTTATGACATAGCCAACAGCTTGCAG
CGCATCTGTGCAGGGGCTGTGGCATCTTCCGTTCGGCCTTTTGTTTAAGATGAGTTATGC
TAGTGTTGTGAGCATTCTGTCCCATCAACAGTAACTGGATCCCTCAGTCCTCTGCTTACC
TCTCTCACACCTGTGTACTGTTACAGACAACTGTGAATCCTGTTGTAGGGATGCTGTATC
CCCGTCTTCCTCTGAAATATGTGTCTGTTTTCAGTGTGAGTGAACAAGGAACTCTACAAT
TTCTTCCTTACCTTCCGTGCACCCAATTTTTAAATCCCCTATGTGATGTTTGTTCATCCT
GTGGAGAAAAAACAACGACAACTCTGTATCTGTGTATGTATTTCCTGTTGTGTCTCTTTG
TGTCTAAATAAAGTTTATCGAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCTATTGATAGCTCTCCCAAAGAGAACACGCCGGTCAGATCATCCTCCAAAAACCACT
ACACCCCCGTGCGCACGGCCAAGCAGACTCCAGGACATTATGGGAAGGATGCTCACCGAA
GTGGAGGACCTGATCTCCATAACTTCATCTCGTCTGGATTTGTCACGTTAGGAATAGGAC
ACACGAAGGGTACAGTGGAAACCATTTTTTACTAAAATACAGAGGTTGCCTATGGAACCC
TGATCAGAGATGCGAAGACGGTGTGGAGGCCATAGGCTGGTCTGGGACAGGATAAGTGGG
GAGGTTCCCCATCAGCTTATCCTGGTGACATGCGTGGCTTCTGACAGCAGCGACCGGGAG
GTCACAAGTGTGACTTTAGGAGGCAATAATAGACTTCCAAGATGCACACGTCCTGCCACC
CCTGGCGTGGAGCATGACGCATATGCTGGATGCTCCCCTCGGGAGGGACCCCGGGCGGCG
TGGTGGGAAACACAGCCCAGAGATGCGGCAGCATCTGCCAAGTGTTTCTCCTCCTCTTGG
CTATTATTCCTCCTCTGTTTTAAAGCCACCCTTTGTTAACTGCTGTCACTCACTGTTCCG
TGTCGTGGGTCTCTAAGCCAGCACACATGTCGAGAGTTTTGTCGTCCTAAGCGCAGCTGC
GTAAACTCTCTCTGTGCTGGGGACACAAAGGTAGAGGTTATGCAGACCTCCAAGCCGCAA
GATGAACGCTAACGTGGCGTTTCTGCCGAGCTGCTTTATGACATAGCCAACAGCTTGCAG
CGCATCTGTGCAGGGGCTGTGGCATCTTCCGTTCGGCCTTTTGTTTAAGATGAGTTATGC
TAGTGTTGTGAGCATTCTGTCCCATCAACAGTAACTGGATCCCTCAGTCCTCTGCTTACC
TCTCTCACACCTGTGTACTGTTACAGACAACTGTGAATCCTGTTGTAGGGATGCTGTATC
CCCGTCTTCCTCTGAAATATGTGTCTGTTTTCAGTGTGAGTGAACAAGGAACTCTACAAT
TTCTTCCTTACCTTCCGTGCACCCAATTTTTAAATCCCCTATGTGATGTTTGTTCATCCT
GTGGAGAAAAAACAACGACAACTCTGTATCTGTGTATGTATTTCCTGTTGTGTCTCTTTG
TGTCTAAATAAAGTTTATCGAGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47192636|emb|CAG13623.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47192636|emb|CAG13623.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               210-557, - strand, RNAz p=0.968412

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               210-557, - strand, RNAz p=0.968412

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               91-341, gnl|bosTau2|chr19 (22989220-22988970)
               

               
               91-341, gnl|Hg17|chr17 (11223453-11223724)
               

               
               91-341, gnl|Mm7|chr11 (66456823-66456565)
               


               
               362-1164, gnl|bosTau2|chr19 (22988971-22988187)
               

               
               362-1164, gnl|Hg17|chr17 (11223723-11224501)
               

               
               362-1164, gnl|Mm7|chr11 (66456566-66455811)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-341, gnl|bosTau2|chr19 (22989220-22988970)
               

               
               91-341, gnl|Hg17|chr17 (11223453-11223724)
               

               
               91-341, gnl|Mm7|chr11 (66456823-66456565)
               


               
               362-1164, gnl|bosTau2|chr19 (22988971-22988187)
               

               
               362-1164, gnl|Hg17|chr17 (11223723-11224501)
               

               
               362-1164, gnl|Mm7|chr11 (66456566-66455811)

	91-341, gnl\|bosTau2\|chr19 (22989220-22988970)
	91-341, gnl\|Hg17\|chr17 (11223453-11223724)
	91-341, gnl\|Mm7\|chr11 (66456823-66456565)

	362-1164, gnl\|bosTau2\|chr19 (22988971-22988187)
	362-1164, gnl\|Hg17\|chr17 (11223723-11224501)
	362-1164, gnl\|Mm7\|chr11 (66456566-66455811)