Non-Coding RNA Search

Ss1.1-Pig3-SRG8012I21.3

Sequence:


               
               CAAAATGAGCATTACTCATTGCTCCAGTAATACTTCATGAACATTAAAATGAAATTTCAT
GAACTTTTCAGTGACACAAGGAAAAGTTTTCCCCCAGCCATTGAGGGCCTTTCAAAAACA
GACAGCACACAATTACCAACCCTTGTTTTTAGAGAGTGAAATTCAGGCCTTGGGCCTTTA
CAGCTAGCTCACTGGTTATAGATTTAGGGCCAGTACCAACCTGCGTCCCTGAAAAATTAC
ATGTTATCGATACCTTGGCCTTCTAGCAAGCTTTTACCATGTTAAACTCTTCATCTTTTA
GAGGAGTGAGGGGACTTTGGTCAATTATCTTGTAGTAAGAGAGTCCTTTCTCATTTCGGT
TTTGGGTTTGTTGTGTATGATTTTTGAATAGGTTAATTTGGTCTCAATTGTTCTCTCTGT
TAATGTATACCCAAGGAAGAGGTCCTAAGAACAGCAGTCTTCAGTTTCCAGCAGAGCCTG
ACCACACTTTCAGTCCGAGGTAGGGAAATGCAAGGGTGCATAAGAAAAGAGGACGATGTT
ACATATCCTGAAGAGCCAGGGTTTAAAATCTGGGATCTTAAGTTCCTCTGGGCATAATTG
CTTTCCTGAGGATGGTAAAACTCCCCAGGTACAGGGAGGGGCCCTTGTGGTGCTACTTAA
AGGGGAAAATTCATTTGGTATTTGTGCCTGTATTCAATACCCCAAGAGGTTTCTGTGGCT
TAATCATGCACATTAGAATAATTTAATGGGATTTCCTACTTCATAAGTGAAGTTAATTAG
TCACCTACTATTCCCCGTCGACTTGATTTTTTTTTTTTTTTTACTTTCCTAATGAGTCTA
TAATATGAGGTAACACATTACAGAGAAGGTTTTTAATCCACTGCTTCTTTCTCAAGAACC
CTTTCCCCATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAATGAGCATTACTCATTGCTCCAGTAATACTTCATGAACATTAAAATGAAATTTCAT
GAACTTTTCAGTGACACAAGGAAAAGTTTTCCCCCAGCCATTGAGGGCCTTTCAAAAACA
GACAGCACACAATTACCAACCCTTGTTTTTAGAGAGTGAAATTCAGGCCTTGGGCCTTTA
CAGCTAGCTCACTGGTTATAGATTTAGGGCCAGTACCAACCTGCGTCCCTGAAAAATTAC
ATGTTATCGATACCTTGGCCTTCTAGCAAGCTTTTACCATGTTAAACTCTTCATCTTTTA
GAGGAGTGAGGGGACTTTGGTCAATTATCTTGTAGTAAGAGAGTCCTTTCTCATTTCGGT
TTTGGGTTTGTTGTGTATGATTTTTGAATAGGTTAATTTGGTCTCAATTGTTCTCTCTGT
TAATGTATACCCAAGGAAGAGGTCCTAAGAACAGCAGTCTTCAGTTTCCAGCAGAGCCTG
ACCACACTTTCAGTCCGAGGTAGGGAAATGCAAGGGTGCATAAGAAAAGAGGACGATGTT
ACATATCCTGAAGAGCCAGGGTTTAAAATCTGGGATCTTAAGTTCCTCTGGGCATAATTG
CTTTCCTGAGGATGGTAAAACTCCCCAGGTACAGGGAGGGGCCCTTGTGGTGCTACTTAA
AGGGGAAAATTCATTTGGTATTTGTGCCTGTATTCAATACCCCAAGAGGTTTCTGTGGCT
TAATCATGCACATTAGAATAATTTAATGGGATTTCCTACTTCATAAGTGAAGTTAATTAG
TCACCTACTATTCCCCGTCGACTTGATTTTTTTTTTTTTTTTACTTTCCTAATGAGTCTA
TAATATGAGGTAACACATTACAGAGAAGGTTTTTAATCCACTGCTTCTTTCTCAAGAACC
CTTTCCCCATGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               3-100, - strand, RNAz p=0.998835

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-100, - strand, RNAz p=0.998835

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-559, gnl|bosTau2|chr7 (37215305-37215871)
               

               
               3-559, gnl|Hg17|chr5 (138643735-138644310)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-559, gnl|bosTau2|chr7 (37215305-37215871)
               

               
               3-559, gnl|Hg17|chr5 (138643735-138644310)

	3-559, gnl\|bosTau2\|chr7 (37215305-37215871)
	3-559, gnl\|Hg17\|chr5 (138643735-138644310)