Non-Coding RNA Search

Ss1.1-Pig3-SRG8012J09.5

Sequence:


               
               TGCCGAGCCACGACAGGAACGTCAAACAAGTCATTTTTTTTTTTCTTTTTTCATTTTCGG
CGGCCCCACAGCATATGCAGTTCCCGGGCCGGGGATCAGATCCAAGCCACAGTTGCACCC
TGTGCTGTAGCTGCAACAATGCCGGATCCTTAACCCACGTGCCAGGCCGGGGGTCGAACC
TGCGTTCCAGTGCTCCAGAAATGCCTCAGATCCCTTTGTACCACAGCAGGAACTCTGATA
CGATGTTCTTAAGATATGTCCCTCTCAGGATTTGAACTGGTCCAGGTAACCATTTGTAAA
AAGCAATTCTTACCCATTTCTTCACATTTCCCTGGCCAAAAAAAAATTTTGTTGTGCTCT
TTTAGAAGCAGTAATTCATGCAGGCCTGTGCTCTGGTCAGAAGAACACTAGCCTAGTCAT
TTTGAGACCTGAATTAATACTTGGTTAAGTAGATCGAAATAACTGGTTCCTTTATTGTCC
CCATCTGCTTGGTTGATCAAGCTTTTGCTGATCATTTCTGAGGCAAATGTGAGTTTTGTA
CGTAGAATCCATTGAGTTACAGTTTCAGATGAGGACTCTGGCAGAAAAATCAGGTAAGCC
CCCAAGGAGTACCACAGAAACATCTGCTGCTGGCCAGCAGCACTCCAGGTGAGTGCACTT
GAAACGTTTTCTGTTATATCACTGTAGAGATAAGTTTGTTATATACATGCACATTAAAAA
GAAAATTTAAAAAAATGTTTCCATGGAGGAAGGTGCTGTAATTCCTTCTACTGTAAAAGT
TAAATGTGGTTTTATGTGCCCAATACCTGATGCATAACTTAATATTTGATATATACTATT
CATTCAACAAATATTTATGTATTGAGCACCTAGAAGAGGACAGAAGCTTCCTCAAATCAG
GTAGAGGTGAGGGCTGCTTACAGTAAACCGCCTGTGGCCCTCTAACCTATCAGAGGTTAG
TTAGATACAGCTTTCTTGCAAGAACACCAGGTAAAAAGAGTTTCTATGGACTTCCCTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCGAGCCACGACAGGAACGTCAAACAAGTCATTTTTTTTTTTCTTTTTTCATTTTCGG
CGGCCCCACAGCATATGCAGTTCCCGGGCCGGGGATCAGATCCAAGCCACAGTTGCACCC
TGTGCTGTAGCTGCAACAATGCCGGATCCTTAACCCACGTGCCAGGCCGGGGGTCGAACC
TGCGTTCCAGTGCTCCAGAAATGCCTCAGATCCCTTTGTACCACAGCAGGAACTCTGATA
CGATGTTCTTAAGATATGTCCCTCTCAGGATTTGAACTGGTCCAGGTAACCATTTGTAAA
AAGCAATTCTTACCCATTTCTTCACATTTCCCTGGCCAAAAAAAAATTTTGTTGTGCTCT
TTTAGAAGCAGTAATTCATGCAGGCCTGTGCTCTGGTCAGAAGAACACTAGCCTAGTCAT
TTTGAGACCTGAATTAATACTTGGTTAAGTAGATCGAAATAACTGGTTCCTTTATTGTCC
CCATCTGCTTGGTTGATCAAGCTTTTGCTGATCATTTCTGAGGCAAATGTGAGTTTTGTA
CGTAGAATCCATTGAGTTACAGTTTCAGATGAGGACTCTGGCAGAAAAATCAGGTAAGCC
CCCAAGGAGTACCACAGAAACATCTGCTGCTGGCCAGCAGCACTCCAGGTGAGTGCACTT
GAAACGTTTTCTGTTATATCACTGTAGAGATAAGTTTGTTATATACATGCACATTAAAAA
GAAAATTTAAAAAAATGTTTCCATGGAGGAAGGTGCTGTAATTCCTTCTACTGTAAAAGT
TAAATGTGGTTTTATGTGCCCAATACCTGATGCATAACTTAATATTTGATATATACTATT
CATTCAACAAATATTTATGTATTGAGCACCTAGAAGAGGACAGAAGCTTCCTCAAATCAG
GTAGAGGTGAGGGCTGCTTACAGTAAACCGCCTGTGGCCCTCTAACCTATCAGAGGTTAG
TTAGATACAGCTTTCTTGCAAGAACACCAGGTAAAAAGAGTTTCTATGGACTTCCCTGGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               620-720, - strand, RNAz p=0.788902

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               620-720, - strand, RNAz p=0.788902

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               509-1007, gnl|bosTau2|chrX (31540216-31539694)
               

               
               509-1007, gnl|Mm7|chrX (8605405-8604883)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               509-1007, gnl|bosTau2|chrX (31540216-31539694)
               

               
               509-1007, gnl|Mm7|chrX (8605405-8604883)

	509-1007, gnl\|bosTau2\|chrX (31540216-31539694)
	509-1007, gnl\|Mm7\|chrX (8605405-8604883)