Non-Coding RNA Search

Ss1.1-Pig3-SRG8012K02.5

Sequence:


               
               GGATTACCCCCTGCTTGGCTTTCCAAAGTTTTGCCCACCCTCCCTGCCCCCATCCAGGAG
TGATGAGGGCCAGTGCTGACCCACAACACTTCCCTTGTCCAGCTGTCTGGGACCGAGGAC
CATCTTTGCTTCTGGGTGGAGGCAACTTCCTGCGACCACCAGGCAGATGCGAGAGGGCCC
AGGTCAGCCTCAGGCTGTGCCCCTAGACTGCAAAGAGCCCTTGGAGCCCTGAAGGGACCT
GAAGGTCATGTCCCAAACCCAAGTGTTCAGTGGGCAAATGAGGGCATGGACTGAAACAGG
GAAGCAACTCTAATCCTATGTCATCTCTCTCAGGAAGCACCAGTACTTATCTTGGGCATG
CACTTGCCCCGAGAAATGCCTGTTTGTGAGTCCTGGAAGAATGATTATTTTTTAAAACGT
TTTGTTGCTTCTCTTGTGCGTCTGAATTCCCTTTTGTACCGGATGGCAGTGCCTGTCTGC
CATCTGTTCCAGGGGCTCTGCAGGCAGCCTCAGTTTCCGGAGGGCTTTCAGATCATTTGT
GTCCTTGAAGGAATACCTGTGTTATGCTGCCAGGACCAGAAGAGCTCACTTTTCTTGTCC
TCTGTTCCCAGCCCCCCTAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATTACCCCCTGCTTGGCTTTCCAAAGTTTTGCCCACCCTCCCTGCCCCCATCCAGGAG
TGATGAGGGCCAGTGCTGACCCACAACACTTCCCTTGTCCAGCTGTCTGGGACCGAGGAC
CATCTTTGCTTCTGGGTGGAGGCAACTTCCTGCGACCACCAGGCAGATGCGAGAGGGCCC
AGGTCAGCCTCAGGCTGTGCCCCTAGACTGCAAAGAGCCCTTGGAGCCCTGAAGGGACCT
GAAGGTCATGTCCCAAACCCAAGTGTTCAGTGGGCAAATGAGGGCATGGACTGAAACAGG
GAAGCAACTCTAATCCTATGTCATCTCTCTCAGGAAGCACCAGTACTTATCTTGGGCATG
CACTTGCCCCGAGAAATGCCTGTTTGTGAGTCCTGGAAGAATGATTATTTTTTAAAACGT
TTTGTTGCTTCTCTTGTGCGTCTGAATTCCCTTTTGTACCGGATGGCAGTGCCTGTCTGC
CATCTGTTCCAGGGGCTCTGCAGGCAGCCTCAGTTTCCGGAGGGCTTTCAGATCATTTGT
GTCCTTGAAGGAATACCTGTGTTATGCTGCCAGGACCAGAAGAGCTCACTTTTCTTGTCC
TCTGTTCCCAGCCCCCCTAAAAAA

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               40-158, - strand, RNAz p=0.789609
               

               
               196-308, - strand, RNAz p=0.55081
               

               
               326-621, - strand, RNAz p=0.992029
               

               
               427-545, - strand, RNAz p=0.996727

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-158, - strand, RNAz p=0.789609
               

               
               196-308, - strand, RNAz p=0.55081
               

               
               326-621, - strand, RNAz p=0.992029
               

               
               427-545, - strand, RNAz p=0.996727

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-621, gnl|bosTau2|chr13 (46618710-46618090)
               

               
               1-621, gnl|canFam2|chr24 (26944257-26944668)
               

               
               1-621, gnl|dasNov1|scaffold_16043 (4127-3714)
               

               
               1-621, gnl|echTel1|scaffold_309010 (125031-125447)
               

               
               1-621, gnl|hg17|chr20 (32978701-32979105)
               

               
               1-621, gnl|Hg17|chr20 (32978701-32979322)
               

               
               1-621, gnl|mm7|chr2 (155302955-155303320)
               

               
               1-621, gnl|Mm7|chr2 (155302955-155303495)
               

               
               1-621, gnl|monDom2|scaffold_6 (12081202-12080818)
               

               
               1-621, gnl|panTro1|chr21_random (9944850-9944446)
               

               
               1-621, gnl|rheMac2|chr10 (29632375-29631988)
               

               
               1-621, gnl|rn3|chr3 (145962061-145962436)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-621, gnl|bosTau2|chr13 (46618710-46618090)
               

               
               1-621, gnl|canFam2|chr24 (26944257-26944668)
               

               
               1-621, gnl|dasNov1|scaffold_16043 (4127-3714)
               

               
               1-621, gnl|echTel1|scaffold_309010 (125031-125447)
               

               
               1-621, gnl|hg17|chr20 (32978701-32979105)
               

               
               1-621, gnl|Hg17|chr20 (32978701-32979322)
               

               
               1-621, gnl|mm7|chr2 (155302955-155303320)
               

               
               1-621, gnl|Mm7|chr2 (155302955-155303495)
               

               
               1-621, gnl|monDom2|scaffold_6 (12081202-12080818)
               

               
               1-621, gnl|panTro1|chr21_random (9944850-9944446)
               

               
               1-621, gnl|rheMac2|chr10 (29632375-29631988)
               

               
               1-621, gnl|rn3|chr3 (145962061-145962436)

	40-158, - strand, RNAz p=0.789609
	196-308, - strand, RNAz p=0.55081
	326-621, - strand, RNAz p=0.992029
	427-545, - strand, RNAz p=0.996727

	1-621, gnl\|bosTau2\|chr13 (46618710-46618090)
	1-621, gnl\|canFam2\|chr24 (26944257-26944668)
	1-621, gnl\|dasNov1\|scaffold_16043 (4127-3714)
	1-621, gnl\|echTel1\|scaffold_309010 (125031-125447)
	1-621, gnl\|hg17\|chr20 (32978701-32979105)
	1-621, gnl\|Hg17\|chr20 (32978701-32979322)
	1-621, gnl\|mm7\|chr2 (155302955-155303320)
	1-621, gnl\|Mm7\|chr2 (155302955-155303495)
	1-621, gnl\|monDom2\|scaffold_6 (12081202-12080818)
	1-621, gnl\|panTro1\|chr21_random (9944850-9944446)
	1-621, gnl\|rheMac2\|chr10 (29632375-29631988)
	1-621, gnl\|rn3\|chr3 (145962061-145962436)