Non-Coding RNA Search

Ss1.1-Pig3-SRG8012N08.5

Sequence:


               
               TGACATTGTCCTCCCAGCGTACGCTTTCGGTGTCTTATTGACATTGTCCTCCCAGCGTAC
GCTTTCGGTGTCTTATTGATATTGTTGGCGCTCTACTTGAGCCTGTCCTTGTAAACGTGG
AGATGTATGCGTGGCTTCACTGGTGATGTCCAAGCTCAGGGTGCCACGTCGCGACACCTG
TATGAAAACGTGATGATTGAACTCACTGCGTCCAGCACGTGAAGGAAAATGTCTGCCTCT
CGAGATGCCTCTTGATGACGCCACTTAACAGATTCTAAATGTGCTGACTGTCCCTGTGTA
CATATGTGTGTTAAAATAAAACCGAACTGTACCGAAGGTGGTTTTTCTCATTGAAACCAT
TGTGCATTCTTTTTAAGCATTCTCCATTGAGATCTCCCCCCACCCCCACCTTTGGTATTA
AATTAAGCCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACATTGTCCTCCCAGCGTACGCTTTCGGTGTCTTATTGACATTGTCCTCCCAGCGTAC
GCTTTCGGTGTCTTATTGATATTGTTGGCGCTCTACTTGAGCCTGTCCTTGTAAACGTGG
AGATGTATGCGTGGCTTCACTGGTGATGTCCAAGCTCAGGGTGCCACGTCGCGACACCTG
TATGAAAACGTGATGATTGAACTCACTGCGTCCAGCACGTGAAGGAAAATGTCTGCCTCT
CGAGATGCCTCTTGATGACGCCACTTAACAGATTCTAAATGTGCTGACTGTCCCTGTGTA
CATATGTGTGTTAAAATAAAACCGAACTGTACCGAAGGTGGTTTTTCTCATTGAAACCAT
TGTGCATTCTTTTTAAGCATTCTCCATTGAGATCTCCCCCCACCCCCACCTTTGGTATTA
AATTAAGCCTCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-120, + strand, RNAz p=0.993006

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-120, + strand, RNAz p=0.993006

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-430, gnl|bosTau2|chr24 (42494474-42494045)
               

               
               1-430, gnl|canFam2|chr1 (21814422-21813847)
               

               
               1-430, gnl|dasNov1|scaffold_2739 (12067-12665)
               

               
               1-430, gnl|echTel1|scaffold_286280 (92186-92701)
               

               
               1-430, gnl|galGal2|chrUn (5080024-5080563)
               

               
               1-430, gnl|hg17|chr18 (52847648-52848193)
               

               
               1-430, gnl|Hg17|chr18 (52847728-52848106)
               

               
               1-430, gnl|loxAfr1|scaffold_1519 (112711-113301)
               

               
               1-430, gnl|mm7|chr18 (64377801-64378342)
               

               
               1-430, gnl|Mm7|chr18 (64377881-64378255)
               

               
               1-430, gnl|monDom2|scaffold_20 (45513257-45512670)
               

               
               1-430, gnl|oryCun1|scaffold_189188 (2200-1666)
               

               
               1-430, gnl|panTro1|chr17 (49723061-49723606)
               

               
               1-430, gnl|rheMac2|chr18 (50297053-50297598)
               

               
               1-430, gnl|rn3|chr18 (60218346-60218887)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-430, gnl|bosTau2|chr24 (42494474-42494045)
               

               
               1-430, gnl|canFam2|chr1 (21814422-21813847)
               

               
               1-430, gnl|dasNov1|scaffold_2739 (12067-12665)
               

               
               1-430, gnl|echTel1|scaffold_286280 (92186-92701)
               

               
               1-430, gnl|galGal2|chrUn (5080024-5080563)
               

               
               1-430, gnl|hg17|chr18 (52847648-52848193)
               

               
               1-430, gnl|Hg17|chr18 (52847728-52848106)
               

               
               1-430, gnl|loxAfr1|scaffold_1519 (112711-113301)
               

               
               1-430, gnl|mm7|chr18 (64377801-64378342)
               

               
               1-430, gnl|Mm7|chr18 (64377881-64378255)
               

               
               1-430, gnl|monDom2|scaffold_20 (45513257-45512670)
               

               
               1-430, gnl|oryCun1|scaffold_189188 (2200-1666)
               

               
               1-430, gnl|panTro1|chr17 (49723061-49723606)
               

               
               1-430, gnl|rheMac2|chr18 (50297053-50297598)
               

               
               1-430, gnl|rn3|chr18 (60218346-60218887)

	1-430, gnl\|bosTau2\|chr24 (42494474-42494045)
	1-430, gnl\|canFam2\|chr1 (21814422-21813847)
	1-430, gnl\|dasNov1\|scaffold_2739 (12067-12665)
	1-430, gnl\|echTel1\|scaffold_286280 (92186-92701)
	1-430, gnl\|galGal2\|chrUn (5080024-5080563)
	1-430, gnl\|hg17\|chr18 (52847648-52848193)
	1-430, gnl\|Hg17\|chr18 (52847728-52848106)
	1-430, gnl\|loxAfr1\|scaffold_1519 (112711-113301)
	1-430, gnl\|mm7\|chr18 (64377801-64378342)
	1-430, gnl\|Mm7\|chr18 (64377881-64378255)
	1-430, gnl\|monDom2\|scaffold_20 (45513257-45512670)
	1-430, gnl\|oryCun1\|scaffold_189188 (2200-1666)
	1-430, gnl\|panTro1\|chr17 (49723061-49723606)
	1-430, gnl\|rheMac2\|chr18 (50297053-50297598)
	1-430, gnl\|rn3\|chr18 (60218346-60218887)